Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042052

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042052


Profile download
5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M25Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252072 RNA5SP320 RNA, 5S ribosomal pseudogene 320 6.6147 0.0000
2 ENSG00000143469 SYT14 synaptotagmin 14 6.4919 0.0000
3 ENSG00000259636 novel transcript 6.3399 0.0000
4 ENSG00000232079 LINC01697 long intergenic non-protein coding RNA 1697 6.2288 0.0000
5 ENSG00000242759 LINC00882 long intergenic non-protein coding RNA 882 6.1497 0.0000
6 ENSG00000279469 TEC 6.0875 0.0000
7 ENSG00000226454 novel transcript 6.0661 0.0000
8 ENSG00000184860 SDR42E1 short chain dehydrogenase/reductase family 42E, member 1 5.9307 0.0000
9 ENSG00000258066 novel transcript 5.8826 0.0000
10 ENSG00000185522 LMNTD2 lamin tail domain containing 2 5.8688 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000249001 novel transcript -4.3378 0.0000
63127 ENSG00000199640 RN7SKP294 RN7SK pseudogene 294 -4.3327 0.0601
63126 ENSG00000011132 APBA3 amyloid beta precursor protein binding family A member 3 -4.3282 0.0000
63125 ENSG00000274020 LINC01138 long intergenic non-protein coding RNA 1138 -4.3240 0.0000
63124 ENSG00000162747 FCGR3B Fc fragment of IgG receptor IIIb -4.3228 0.0000
63123 ENSG00000283796 MIR6510 microRNA 6510 -4.3219 0.0459
63122 ENSG00000280154 TEC -4.3219 0.4105
63121 ENSG00000271642 MARK3P1 microtubule affinity regulating kinase 3 pseudogene 1 -4.3219 0.4105
63120 ENSG00000270938 RAP2CP1 RAP2C pseudogene 1 -4.3219 0.0011
63119 ENSG00000267659 LINC01482 long intergenic non-protein coding RNA 1482 -4.3219 0.4105

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...