Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2042052
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2042052
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP062328
SRP062328_M25
Human oocyte DNA methylome
Methylome
Oocyte (mature metaphase (MII) stage )
Human
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000252072
RNA5SP320
RNA, 5S ribosomal pseudogene 320
6.6147
0.0000
2
ENSG00000143469
SYT14
synaptotagmin 14
6.4919
0.0000
3
ENSG00000259636
novel transcript
6.3399
0.0000
4
ENSG00000232079
LINC01697
long intergenic non-protein coding RNA 1697
6.2288
0.0000
5
ENSG00000242759
LINC00882
long intergenic non-protein coding RNA 882
6.1497
0.0000
6
ENSG00000279469
TEC
6.0875
0.0000
7
ENSG00000226454
novel transcript
6.0661
0.0000
8
ENSG00000184860
SDR42E1
short chain dehydrogenase/reductase family 42E, member 1
5.9307
0.0000
9
ENSG00000258066
novel transcript
5.8826
0.0000
10
ENSG00000185522
LMNTD2
lamin tail domain containing 2
5.8688
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000249001
novel transcript
-4.3378
0.0000
63127
ENSG00000199640
RN7SKP294
RN7SK pseudogene 294
-4.3327
0.0601
63126
ENSG00000011132
APBA3
amyloid beta precursor protein binding family A member 3
-4.3282
0.0000
63125
ENSG00000274020
LINC01138
long intergenic non-protein coding RNA 1138
-4.3240
0.0000
63124
ENSG00000162747
FCGR3B
Fc fragment of IgG receptor IIIb
-4.3228
0.0000
63123
ENSG00000283796
MIR6510
microRNA 6510
-4.3219
0.0459
63122
ENSG00000280154
TEC
-4.3219
0.4105
63121
ENSG00000271642
MARK3P1
microtubule affinity regulating kinase 3 pseudogene 1
-4.3219
0.4105
63120
ENSG00000270938
RAP2CP1
RAP2C pseudogene 1
-4.3219
0.0011
63119
ENSG00000267659
LINC01482
long intergenic non-protein coding RNA 1482
-4.3219
0.4105
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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