SHOGoiN Cell Methylome: GSM2042052
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2042052 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP062328 | SRP062328_M25 | Human oocyte DNA methylome | Methylome | Oocyte (mature metaphase (MII) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000252072 | RNA5SP320 | RNA, 5S ribosomal pseudogene 320 | 6.6147 | 0.0000 |
| 2 | ENSG00000143469 | SYT14 | synaptotagmin 14 | 6.4919 | 0.0000 |
| 3 | ENSG00000259636 | novel transcript | 6.3399 | 0.0000 | |
| 4 | ENSG00000232079 | LINC01697 | long intergenic non-protein coding RNA 1697 | 6.2288 | 0.0000 |
| 5 | ENSG00000242759 | LINC00882 | long intergenic non-protein coding RNA 882 | 6.1497 | 0.0000 |
| 6 | ENSG00000279469 | TEC | 6.0875 | 0.0000 | |
| 7 | ENSG00000226454 | novel transcript | 6.0661 | 0.0000 | |
| 8 | ENSG00000184860 | SDR42E1 | short chain dehydrogenase/reductase family 42E, member 1 | 5.9307 | 0.0000 |
| 9 | ENSG00000258066 | novel transcript | 5.8826 | 0.0000 | |
| 10 | ENSG00000185522 | LMNTD2 | lamin tail domain containing 2 | 5.8688 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000271434 | novel transcript, antisense to NKX1-2 | -4.5442 | 0.0000 | |
| 63340 | ENSG00000229544 | NKX1-2 | NK1 homeobox 2 | -4.5442 | 0.0000 |
| 63339 | ENSG00000100604 | CHGA | chromogranin A | -4.5442 | 0.0007 |
| 63338 | ENSG00000251719 | RNU6-408P | RNA, U6 small nuclear 408, pseudogene | -4.5437 | 0.0204 |
| 63337 | ENSG00000253848 | novel transcript | -4.5422 | 0.0000 | |
| 63336 | ENSG00000183808 | RBM12B | RNA binding motif protein 12B | -4.5422 | 0.0000 |
| 63335 | ENSG00000253434 | LINC02237 | long intergenic non-protein coding RNA 2237 | -4.5370 | 0.0000 |
| 63334 | ENSG00000116962 | NID1 | nidogen 1 | -4.5328 | 0.0003 |
| 63333 | ENSG00000174136 | RGMB | repulsive guidance molecule BMP co-receptor b | -4.5314 | 0.0000 |
| 63332 | ENSG00000102100 | SLC35A2 | solute carrier family 35 member A2 | -4.5262 | 0.0000 |
