SHOGoiN Cell Methylome: GSM2042052

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042052


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M25Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252072 RNA5SP320 RNA, 5S ribosomal pseudogene 320 6.6147 0.0000
2 ENSG00000143469 SYT14 synaptotagmin 14 6.4919 0.0000
3 ENSG00000259636 novel transcript 6.3399 0.0000
4 ENSG00000232079 LINC01697 long intergenic non-protein coding RNA 1697 6.2288 0.0000
5 ENSG00000242759 LINC00882 long intergenic non-protein coding RNA 882 6.1497 0.0000
6 ENSG00000279469 TEC 6.0875 0.0000
7 ENSG00000226454 novel transcript 6.0661 0.0000
8 ENSG00000184860 SDR42E1 short chain dehydrogenase/reductase family 42E, member 1 5.9307 0.0000
9 ENSG00000258066 novel transcript 5.8826 0.0000
10 ENSG00000185522 LMNTD2 lamin tail domain containing 2 5.8688 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000271434 novel transcript, antisense to NKX1-2 -4.5442 0.0000
63340 ENSG00000229544 NKX1-2 NK1 homeobox 2 -4.5442 0.0000
63339 ENSG00000100604 CHGA chromogranin A -4.5442 0.0007
63338 ENSG00000251719 RNU6-408P RNA, U6 small nuclear 408, pseudogene -4.5437 0.0204
63337 ENSG00000253848 novel transcript -4.5422 0.0000
63336 ENSG00000183808 RBM12B RNA binding motif protein 12B -4.5422 0.0000
63335 ENSG00000253434 LINC02237 long intergenic non-protein coding RNA 2237 -4.5370 0.0000
63334 ENSG00000116962 NID1 nidogen 1 -4.5328 0.0003
63333 ENSG00000174136 RGMB repulsive guidance molecule BMP co-receptor b -4.5314 0.0000
63332 ENSG00000102100 SLC35A2 solute carrier family 35 member A2 -4.5262 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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