Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042052

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2042052 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP062328	SRP062328_M25	Human oocyte DNA methylome	Methylome	Oocyte (mature metaphase (MII) stage )	Human	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000252072	RNA5SP320	RNA, 5S ribosomal pseudogene 320	6.6147	0.0000
2	ENSG00000143469	SYT14	synaptotagmin 14	6.4919	0.0000
3	ENSG00000259636		novel transcript	6.3399	0.0000
4	ENSG00000232079	LINC01697	long intergenic non-protein coding RNA 1697	6.2288	0.0000
5	ENSG00000242759	LINC00882	long intergenic non-protein coding RNA 882	6.1497	0.0000
6	ENSG00000279469		TEC	6.0875	0.0000
7	ENSG00000226454		novel transcript	6.0661	0.0000
8	ENSG00000184860	SDR42E1	short chain dehydrogenase/reductase family 42E, member 1	5.9307	0.0000
9	ENSG00000258066		novel transcript	5.8826	0.0000
10	ENSG00000185522	LMNTD2	lamin tail domain containing 2	5.8688	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000249001		novel transcript	-4.3378	0.0000
63127	ENSG00000199640	RN7SKP294	RN7SK pseudogene 294	-4.3327	0.0601
63126	ENSG00000011132	APBA3	amyloid beta precursor protein binding family A member 3	-4.3282	0.0000
63125	ENSG00000274020	LINC01138	long intergenic non-protein coding RNA 1138	-4.3240	0.0000
63124	ENSG00000162747	FCGR3B	Fc fragment of IgG receptor IIIb	-4.3228	0.0000
63123	ENSG00000283796	MIR6510	microRNA 6510	-4.3219	0.0459
63122	ENSG00000280154		TEC	-4.3219	0.4105
63121	ENSG00000271642	MARK3P1	microtubule affinity regulating kinase 3 pseudogene 1	-4.3219	0.4105
63120	ENSG00000270938	RAP2CP1	RAP2C pseudogene 1	-4.3219	0.0011
63119	ENSG00000267659	LINC01482	long intergenic non-protein coding RNA 1482	-4.3219	0.4105

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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