Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042053

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042053


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M26Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000178586 OR6B3 olfactory receptor family 6 subfamily B member 3 6.5699 0.0000
2 ENSG00000207016 SNORA36C small nucleolar RNA, H/ACA box 36C 6.4919 0.0000
3 ENSG00000183161 FANCF FA complementation group F 6.3750 0.0000
4 ENSG00000204599 TRIM39 tripartite motif containing 39 6.3038 0.0000
5 ENSG00000248167 TRIM39-RPP21 TRIM39-RPP21 readthrough 6.3038 0.0000
6 ENSG00000270604 HCG17 HLA complex group 17 6.3038 0.0000
7 ENSG00000137288 UQCC2 ubiquinol-cytochrome c reductase complex assembly factor 2 6.2854 0.0000
8 ENSG00000206989 SNORD63 small nucleolar RNA, C/D box 63 6.2854 0.0000
9 ENSG00000222937 SNORD63B small nucleolar RNA, C/D box 63B 6.2854 0.0000
10 ENSG00000266509 MIR3934 microRNA 3934 6.2854 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000096872 IFT74 intraflagellar transport 74 -4.6203 0.0000
63127 ENSG00000105428 ZNRF4 zinc and ring finger 4 -4.6144 0.0201
63126 ENSG00000273271 novel transcript, antisense to SOD1 -4.6112 0.0000
63125 ENSG00000250802 ZBED3-AS1 ZBED3 antisense RNA 1 -4.6110 0.0000
63124 ENSG00000232022 FAAHP1 fatty acid amide hydrolase pseudogene 1 -4.6097 0.0000
63123 ENSG00000278177 novel transcript, antisense to GPC6 -4.6085 0.0000
63122 ENSG00000183098 GPC6 glypican 6 -4.6085 0.0000
63121 ENSG00000112559 MDFI MyoD family inhibitor -4.6072 0.0000
63120 ENSG00000239779 WBP1 WW domain binding protein 1 -4.6046 0.0000
63119 ENSG00000237947 novel transcript -4.6007 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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