SHOGoiN Cell Methylome: GSM2042053

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042053


Profile download
5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M26Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000178586 OR6B3 olfactory receptor family 6 subfamily B member 3 6.5699 0.0000
2 ENSG00000207016 SNORA36C small nucleolar RNA, H/ACA box 36C 6.4919 0.0000
3 ENSG00000183161 FANCF FA complementation group F 6.3750 0.0000
4 ENSG00000204599 TRIM39 tripartite motif containing 39 6.3038 0.0000
5 ENSG00000248167 TRIM39-RPP21 TRIM39-RPP21 readthrough 6.3038 0.0000
6 ENSG00000270604 HCG17 HLA complex group 17 6.3038 0.0000
7 ENSG00000137288 UQCC2 ubiquinol-cytochrome c reductase complex assembly factor 2 6.2854 0.0000
8 ENSG00000206989 SNORD63 small nucleolar RNA, C/D box 63 6.2854 0.0000
9 ENSG00000222937 SNORD63B small nucleolar RNA, C/D box 63B 6.2854 0.0000
10 ENSG00000266509 MIR3934 microRNA 3934 6.2854 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000196338 NLGN3 neuroligin 3 -4.8411 0.0008
63340 ENSG00000237987 novel transcript -4.8397 0.0064
63339 ENSG00000206557 TRIM71 tripartite motif containing 71 -4.8368 0.0000
63338 ENSG00000283813 MIR4485 microRNA 4485 -4.8356 0.0000
63337 ENSG00000092054 MYH7 myosin heavy chain 7 -4.8320 0.0003
63336 ENSG00000221464 MIR1271 microRNA 1271 -4.8315 0.0000
63335 ENSG00000175414 ARL10 ADP ribosylation factor like GTPase 10 -4.8315 0.0000
63334 ENSG00000232533 novel transcript -4.8309 0.0087
63333 ENSG00000102172 SMS spermine synthase -4.8261 0.0000
63332 ENSG00000109680 TBC1D19 TBC1 domain family member 19 -4.8192 0.0008

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...