SHOGoiN Cell Methylome: GSM2042054
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2042054 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP062328 | SRP062328_M27 | Human oocyte DNA methylome | Methylome | Oocyte (mature metaphase (MII) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000017483 | SLC38A5 | solute carrier family 38 member 5 | 4.3219 | 0.0000 |
| 2 | ENSG00000200769 | NA | 4.1699 | 0.0000 | |
| 3 | ENSG00000231259 | anaphase promoting complex subunit 1 (ANAPC1) pseudogene | 4.0875 | 0.0000 | |
| 4 | ENSG00000260161 | MTCYBP28 | MT-CYB pseudogene 28 | 4.0875 | 0.0000 |
| 5 | ENSG00000266931 | required for meiotic nuclear division 5 homolog A (S. cerevisiae) (RMND5A) pseudogene | 4.0875 | 0.0000 | |
| 6 | ENSG00000201298 | RNU6-1164P | RNA, U6 small nuclear 1164, pseudogene | 4.0000 | 0.0000 |
| 8 | ENSG00000207711 | MIR525 | microRNA 525 | 3.8074 | 0.0000 |
| 9 | ENSG00000207771 | MIR550A1 | microRNA 550a-1 | 3.8074 | 0.0000 |
| 10 | ENSG00000226339 | RPS26P56 | ribosomal protein S26 pseudogene 56 | 3.8074 | 0.0000 |
| 63332 | ENSG00000204117 | novel transcript | -2.6430 | 0.1772 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000125124 | BBS2 | Bardet-Biedl syndrome 2 | -2.6567 | 0.0095 |
| 63340 | ENSG00000231258 | ZSWIM5P2 | zinc finger SWIM-type containing 5 pseudogene 2 | -2.6536 | 0.0475 |
| 63339 | ENSG00000188013 | MEIS3P2 | Meis homeobox 3 pseudogene 2 | -2.6536 | 0.0475 |
| 63338 | ENSG00000142632 | ARHGEF19 | Rho guanine nucleotide exchange factor 19 | -2.6528 | 0.0390 |
| 63337 | ENSG00000269815 | novel transcript, sense intronic ABHD8 | -2.6512 | 0.0063 | |
| 63336 | ENSG00000265287 | novel transcript, antisense to novel protein | -2.6486 | 0.0478 | |
| 63335 | ENSG00000279656 | TEC | -2.6462 | 0.2545 | |
| 63334 | ENSG00000250564 | novel transcript | -2.6462 | 0.2545 | |
| 63333 | ENSG00000056998 | GYG2 | glycogenin 2 | -2.6455 | 0.6296 |
| 63332 | ENSG00000204117 | novel transcript | -2.6430 | 0.1772 |
