Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2042054
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2042054
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP062328
SRP062328_M27
Human oocyte DNA methylome
Methylome
Oocyte (mature metaphase (MII) stage )
Human
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000017483
SLC38A5
solute carrier family 38 member 5
4.3219
0.0000
2
ENSG00000200769
Y RNA
4.1699
0.0000
3
ENSG00000231259
ANAPC1P2
ANAPC1 pseudogene 2
4.0875
0.0000
4
ENSG00000260161
MTCYBP28
MT-CYB pseudogene 28
4.0875
0.0000
5
ENSG00000266931
required for meiotic nuclear division 5 homolog A (S. cerevisiae) (RMND5A) pseudogene
4.0875
0.0000
6
ENSG00000201298
RNU6-1164P
RNA, U6 small nuclear 1164, pseudogene
4.0000
0.0000
8
ENSG00000207711
MIR525
microRNA 525
3.8074
0.0000
9
ENSG00000207771
MIR550A1
microRNA 550a-1
3.8074
0.0000
10
ENSG00000226339
RPS26P56
ribosomal protein S26 pseudogene 56
3.8074
0.0000
63119
ENSG00000205362
MT1A
metallothionein 1A
-2.5850
0.6238
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000212215
RNU6-913P
RNA, U6 small nuclear 913, pseudogene
-2.5850
1.0000
63127
ENSG00000211945
IGHV1-18
immunoglobulin heavy variable 1-18
-2.5850
1.0000
63126
ENSG00000211783
TRAV9-1
T cell receptor alpha variable 9-1
-2.5850
1.0000
63125
ENSG00000211663
IGLV3-19
immunoglobulin lambda variable 3-19
-2.5850
1.0000
63124
ENSG00000211598
IGKV4-1
immunoglobulin kappa variable 4-1
-2.5850
1.0000
63123
ENSG00000206865
Y RNA
-2.5850
1.0000
63122
ENSG00000206178
HBZP1
hemoglobin subunit zeta pseudogene 1
-2.5850
1.0000
63121
ENSG00000206177
HBM
hemoglobin subunit mu
-2.5850
0.6238
63120
ENSG00000206014
OR7E161P
olfactory receptor family 7 subfamily E member 161 pseudogene
-2.5850
1.0000
63119
ENSG00000205362
MT1A
metallothionein 1A
-2.5850
0.6238
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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