Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042054

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2042054 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP062328	SRP062328_M27	Human oocyte DNA methylome	Methylome	Oocyte (mature metaphase (MII) stage )	Human	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000017483	SLC38A5	solute carrier family 38 member 5	4.3219	0.0000
2	ENSG00000200769		Y RNA	4.1699	0.0000
3	ENSG00000231259	ANAPC1P2	ANAPC1 pseudogene 2	4.0875	0.0000
4	ENSG00000260161	MTCYBP28	MT-CYB pseudogene 28	4.0875	0.0000
5	ENSG00000266931		required for meiotic nuclear division 5 homolog A (S. cerevisiae) (RMND5A) pseudogene	4.0875	0.0000
6	ENSG00000201298	RNU6-1164P	RNA, U6 small nuclear 1164, pseudogene	4.0000	0.0000
8	ENSG00000207711	MIR525	microRNA 525	3.8074	0.0000
9	ENSG00000207771	MIR550A1	microRNA 550a-1	3.8074	0.0000
10	ENSG00000226339	RPS26P56	ribosomal protein S26 pseudogene 56	3.8074	0.0000
63119	ENSG00000205362	MT1A	metallothionein 1A	-2.5850	0.6238

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000212215	RNU6-913P	RNA, U6 small nuclear 913, pseudogene	-2.5850	1.0000
63127	ENSG00000211945	IGHV1-18	immunoglobulin heavy variable 1-18	-2.5850	1.0000
63126	ENSG00000211783	TRAV9-1	T cell receptor alpha variable 9-1	-2.5850	1.0000
63125	ENSG00000211663	IGLV3-19	immunoglobulin lambda variable 3-19	-2.5850	1.0000
63124	ENSG00000211598	IGKV4-1	immunoglobulin kappa variable 4-1	-2.5850	1.0000
63123	ENSG00000206865		Y RNA	-2.5850	1.0000
63122	ENSG00000206178	HBZP1	hemoglobin subunit zeta pseudogene 1	-2.5850	1.0000
63121	ENSG00000206177	HBM	hemoglobin subunit mu	-2.5850	0.6238
63120	ENSG00000206014	OR7E161P	olfactory receptor family 7 subfamily E member 161 pseudogene	-2.5850	1.0000
63119	ENSG00000205362	MT1A	metallothionein 1A	-2.5850	0.6238

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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