Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042054

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042054


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M27Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000017483 SLC38A5 solute carrier family 38 member 5 4.3219 0.0000
2 ENSG00000200769 Y RNA 4.1699 0.0000
3 ENSG00000231259 ANAPC1P2 ANAPC1 pseudogene 2 4.0875 0.0000
4 ENSG00000260161 MTCYBP28 MT-CYB pseudogene 28 4.0875 0.0000
5 ENSG00000266931 required for meiotic nuclear division 5 homolog A (S. cerevisiae) (RMND5A) pseudogene 4.0875 0.0000
6 ENSG00000201298 RNU6-1164P RNA, U6 small nuclear 1164, pseudogene 4.0000 0.0000
8 ENSG00000207711 MIR525 microRNA 525 3.8074 0.0000
9 ENSG00000207771 MIR550A1 microRNA 550a-1 3.8074 0.0000
10 ENSG00000226339 RPS26P56 ribosomal protein S26 pseudogene 56 3.8074 0.0000
63119 ENSG00000205362 MT1A metallothionein 1A -2.5850 0.6238

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000212215 RNU6-913P RNA, U6 small nuclear 913, pseudogene -2.5850 1.0000
63127 ENSG00000211945 IGHV1-18 immunoglobulin heavy variable 1-18 -2.5850 1.0000
63126 ENSG00000211783 TRAV9-1 T cell receptor alpha variable 9-1 -2.5850 1.0000
63125 ENSG00000211663 IGLV3-19 immunoglobulin lambda variable 3-19 -2.5850 1.0000
63124 ENSG00000211598 IGKV4-1 immunoglobulin kappa variable 4-1 -2.5850 1.0000
63123 ENSG00000206865 Y RNA -2.5850 1.0000
63122 ENSG00000206178 HBZP1 hemoglobin subunit zeta pseudogene 1 -2.5850 1.0000
63121 ENSG00000206177 HBM hemoglobin subunit mu -2.5850 0.6238
63120 ENSG00000206014 OR7E161P olfactory receptor family 7 subfamily E member 161 pseudogene -2.5850 1.0000
63119 ENSG00000205362 MT1A metallothionein 1A -2.5850 0.6238

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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