SHOGoiN Cell Methylome: GSM2042054
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2042054 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP062328 | SRP062328_M27 | Human oocyte DNA methylome | Methylome | Oocyte (mature metaphase (MII) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000017483 | SLC38A5 | solute carrier family 38 member 5 | 4.3219 | 0.0000 |
| 2 | ENSG00000200769 | NA | 4.1699 | 0.0000 | |
| 3 | ENSG00000231259 | NA | 4.0875 | 0.0000 | |
| 4 | ENSG00000260161 | MTCYBP28 | mitochondrially encoded cytochrome b pseudogene 28 | 4.0875 | 0.0000 |
| 5 | ENSG00000266931 | NA | 4.0875 | 0.0000 | |
| 6 | ENSG00000201298 | RNU6-1164P | RNA, U6 small nuclear 1164, pseudogene | 4.0000 | 0.0000 |
| 8 | ENSG00000207711 | MIR525 | microRNA 525 | 3.8074 | 0.0000 |
| 9 | ENSG00000207771 | MIR550A1 | microRNA 550a-1 | 3.8074 | 0.0000 |
| 10 | ENSG00000226339 | RPS26P56 | ribosomal protein S26 pseudogene 56 | 3.8074 | 0.0000 |
| 63638 | ENSG00000219355 | RPL31P52 | ribosomal protein L31 pseudogene 52 | -3.0000 | 0.0313 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63647 | ENSG00000230231 | FMO7P | flavin containing monooxygenase 7 pseudogene | -3.0000 | 0.6196 |
| 63646 | ENSG00000229347 | NA | -3.0000 | 1.0000 | |
| 63645 | ENSG00000228398 | HMGN2P25 | high mobility group nucleosomal binding domain 2 pseudogene 25 | -3.0000 | 1.0000 |
| 63644 | ENSG00000228043 | NA | -3.0000 | 0.0744 | |
| 63643 | ENSG00000226058 | NA | -3.0000 | 1.0000 | |
| 63642 | ENSG00000225462 | FDPSP1 | farnesyl diphosphate synthase pseudogene 1 | -3.0000 | 0.6196 |
| 63641 | ENSG00000224406 | LINC02052 | long intergenic non-protein coding RNA 2052 | -3.0000 | 0.2713 |
| 63640 | ENSG00000223404 | LINC00397 | long intergenic non-protein coding RNA 397 | -3.0000 | 1.0000 |
| 63639 | ENSG00000222426 | RNU2-50P | RNA, U2 small nuclear 50, pseudogene | -3.0000 | 1.0000 |
| 63638 | ENSG00000219355 | RPL31P52 | ribosomal protein L31 pseudogene 52 | -3.0000 | 0.0313 |
