SHOGoiN Cell Methylome: GSM2042054

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042054


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M27Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000017483 SLC38A5 solute carrier family 38 member 5 4.3219 0.0000
2 ENSG00000200769 NA 4.1699 0.0000
3 ENSG00000231259 anaphase promoting complex subunit 1 (ANAPC1) pseudogene 4.0875 0.0000
4 ENSG00000260161 MTCYBP28 MT-CYB pseudogene 28 4.0875 0.0000
5 ENSG00000266931 required for meiotic nuclear division 5 homolog A (S. cerevisiae) (RMND5A) pseudogene 4.0875 0.0000
6 ENSG00000201298 RNU6-1164P RNA, U6 small nuclear 1164, pseudogene 4.0000 0.0000
8 ENSG00000207711 MIR525 microRNA 525 3.8074 0.0000
9 ENSG00000207771 MIR550A1 microRNA 550a-1 3.8074 0.0000
10 ENSG00000226339 RPS26P56 ribosomal protein S26 pseudogene 56 3.8074 0.0000
63332 ENSG00000204117 novel transcript -2.6430 0.1772

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000125124 BBS2 Bardet-Biedl syndrome 2 -2.6567 0.0095
63340 ENSG00000231258 ZSWIM5P2 zinc finger SWIM-type containing 5 pseudogene 2 -2.6536 0.0475
63339 ENSG00000188013 MEIS3P2 Meis homeobox 3 pseudogene 2 -2.6536 0.0475
63338 ENSG00000142632 ARHGEF19 Rho guanine nucleotide exchange factor 19 -2.6528 0.0390
63337 ENSG00000269815 novel transcript, sense intronic ABHD8 -2.6512 0.0063
63336 ENSG00000265287 novel transcript, antisense to novel protein -2.6486 0.0478
63335 ENSG00000279656 TEC -2.6462 0.2545
63334 ENSG00000250564 novel transcript -2.6462 0.2545
63333 ENSG00000056998 GYG2 glycogenin 2 -2.6455 0.6296
63332 ENSG00000204117 novel transcript -2.6430 0.1772

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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