Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042055

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2042055 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP062328	SRP062328_M28	Human oocyte DNA methylome	Methylome	Oocyte (mature metaphase (MII) stage )	Human	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000252914	RNU6-789P	RNA, U6 small nuclear 789, pseudogene	3.9069	0.0000
2	ENSG00000212167	RNU6-763P	RNA, U6 small nuclear 763, pseudogene	3.5850	0.0000
3	ENSG00000224540	TFDP1P1	TFDP1 pseudogene 1	3.5850	0.0000
4	ENSG00000236610	SOCS5P1	suppressor of cytokine signaling 5 pseudogene 1	3.5850	0.0000
5	ENSG00000239149	SNORA59A	small nucleolar RNA, H/ACA box 59A	3.5850	0.0000
6	ENSG00000242094	FOXP1-IT1	FOXP1 intronic transcript 1	3.4594	0.0000
7	ENSG00000257852		gamma-aminobutyric acid (GABA) A receptor, pi (GABRP) pseudogene	3.4594	0.0000
8	ENSG00000259727		novel transcript	3.4594	0.0000
9	ENSG00000267583		novel transcript	3.4594	0.0000
10	ENSG00000277855		novel transcript, antisense to FOXP1	3.4594	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000252250		Y RNA	-2.3219	1.0000
63127	ENSG00000251923	RNU6-276P	RNA, U6 small nuclear 276, pseudogene	-2.3219	1.0000
63126	ENSG00000251688	LINC02507	long intergenic non-protein coding RNA 2507	-2.3219	1.0000
63125	ENSG00000251649	LINC02379	long intergenic non-protein coding RNA 2379	-2.3219	1.0000
63124	ENSG00000251194		novel transcript	-2.3219	0.6160
63123	ENSG00000250483	PPM1AP1	protein phosphatase, Mg2+/Mn2+ dependent 1A pseudogene 1	-2.3219	1.0000
63122	ENSG00000250326		novel transcript	-2.3219	1.0000
63121	ENSG00000250099		transient receptor potential cation channel subfamily C pseudogene	-2.3219	1.0000
63120	ENSG00000249620	H3P18	H3 histone pseudogene 18	-2.3219	1.0000
63119	ENSG00000249605		novel transcript	-2.3219	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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