SHOGoiN Cell Methylome: GSM2042055
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2042055 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP062328 | SRP062328_M28 | Human oocyte DNA methylome | Methylome | Oocyte (mature metaphase (MII) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000252914 | RNU6-789P | RNA, U6 small nuclear 789, pseudogene | 3.9069 | 0.0000 |
| 2 | ENSG00000212167 | RNU6-763P | RNA, U6 small nuclear 763, pseudogene | 3.5850 | 0.0000 |
| 3 | ENSG00000224540 | transcription factor Dp-1 (TFDP1) pseudogene | 3.5850 | 0.0000 | |
| 4 | ENSG00000236610 | SOCS5P1 | suppressor of cytokine signaling 5 pseudogene 1 | 3.5850 | 0.0000 |
| 5 | ENSG00000239149 | SNORA59A | small nucleolar RNA, H/ACA box 59A | 3.5850 | 0.0000 |
| 6 | ENSG00000242094 | FOXP1-IT1 | FOXP1 intronic transcript 1 | 3.4594 | 0.0000 |
| 7 | ENSG00000257852 | gamma-aminobutyric acid (GABA) A receptor, pi (GABRP) pseudogene | 3.4594 | 0.0000 | |
| 8 | ENSG00000259727 | novel transcript | 3.4594 | 0.0000 | |
| 9 | ENSG00000267583 | novel transcript | 3.4594 | 0.0000 | |
| 10 | ENSG00000277855 | novel transcript, antisense to FOXP1 | 3.4594 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000243488 | RN7SL337P | RNA, 7SL, cytoplasmic 337, pseudogene | -2.5339 | 0.4071 |
| 63340 | ENSG00000187912 | CLEC17A | C-type lectin domain containing 17A | -2.5339 | 0.4071 |
| 63339 | ENSG00000211710 | TRBV4-1 | T cell receptor beta variable 4-1 | -2.5324 | 0.2598 |
| 63338 | ENSG00000250133 | HOXC-AS2 | HOXC cluster antisense RNA 2 | -2.5258 | 0.2525 |
| 63337 | ENSG00000258602 | LINC01629 | long intergenic non-protein coding RNA 1629 | -2.5168 | 0.0309 |
| 63336 | ENSG00000245552 | novel transcript, antisense to SESN3 | -2.5161 | 0.0019 | |
| 63335 | ENSG00000233013 | FAM157B | family with sequence similarity 157 member B | -2.5161 | 0.2598 |
| 63334 | ENSG00000165349 | SLC7A3 | solute carrier family 7 member 3 | -2.5161 | 0.2598 |
| 63333 | ENSG00000272070 | novel transcript | -2.5145 | 0.0201 | |
| 63332 | ENSG00000235559 | NOP56P1 | NOP56 ribonucleoprotein pseudogene 1 | -2.5133 | 0.0216 |
