Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2042055
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2042055
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP062328
SRP062328_M28
Human oocyte DNA methylome
Methylome
Oocyte (mature metaphase (MII) stage )
Human
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000252914
RNU6-789P
RNA, U6 small nuclear 789, pseudogene
3.9069
0.0000
2
ENSG00000212167
RNU6-763P
RNA, U6 small nuclear 763, pseudogene
3.5850
0.0000
3
ENSG00000224540
TFDP1P1
TFDP1 pseudogene 1
3.5850
0.0000
4
ENSG00000236610
SOCS5P1
suppressor of cytokine signaling 5 pseudogene 1
3.5850
0.0000
5
ENSG00000239149
SNORA59A
small nucleolar RNA, H/ACA box 59A
3.5850
0.0000
6
ENSG00000242094
FOXP1-IT1
FOXP1 intronic transcript 1
3.4594
0.0000
7
ENSG00000257852
gamma-aminobutyric acid (GABA) A receptor, pi (GABRP) pseudogene
3.4594
0.0000
8
ENSG00000259727
novel transcript
3.4594
0.0000
9
ENSG00000267583
novel transcript
3.4594
0.0000
10
ENSG00000277855
novel transcript, antisense to FOXP1
3.4594
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000252250
Y RNA
-2.3219
1.0000
63127
ENSG00000251923
RNU6-276P
RNA, U6 small nuclear 276, pseudogene
-2.3219
1.0000
63126
ENSG00000251688
LINC02507
long intergenic non-protein coding RNA 2507
-2.3219
1.0000
63125
ENSG00000251649
LINC02379
long intergenic non-protein coding RNA 2379
-2.3219
1.0000
63124
ENSG00000251194
novel transcript
-2.3219
0.6160
63123
ENSG00000250483
PPM1AP1
protein phosphatase, Mg2+/Mn2+ dependent 1A pseudogene 1
-2.3219
1.0000
63122
ENSG00000250326
novel transcript
-2.3219
1.0000
63121
ENSG00000250099
transient receptor potential cation channel subfamily C pseudogene
-2.3219
1.0000
63120
ENSG00000249620
H3P18
H3 histone pseudogene 18
-2.3219
1.0000
63119
ENSG00000249605
novel transcript
-2.3219
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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