Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042055

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042055


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M28Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252914 RNU6-789P RNA, U6 small nuclear 789, pseudogene 3.9069 0.0000
2 ENSG00000212167 RNU6-763P RNA, U6 small nuclear 763, pseudogene 3.5850 0.0000
3 ENSG00000224540 TFDP1P1 TFDP1 pseudogene 1 3.5850 0.0000
4 ENSG00000236610 SOCS5P1 suppressor of cytokine signaling 5 pseudogene 1 3.5850 0.0000
5 ENSG00000239149 SNORA59A small nucleolar RNA, H/ACA box 59A 3.5850 0.0000
6 ENSG00000242094 FOXP1-IT1 FOXP1 intronic transcript 1 3.4594 0.0000
7 ENSG00000257852 gamma-aminobutyric acid (GABA) A receptor, pi (GABRP) pseudogene 3.4594 0.0000
8 ENSG00000259727 novel transcript 3.4594 0.0000
9 ENSG00000267583 novel transcript 3.4594 0.0000
10 ENSG00000277855 novel transcript, antisense to FOXP1 3.4594 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000252250 Y RNA -2.3219 1.0000
63127 ENSG00000251923 RNU6-276P RNA, U6 small nuclear 276, pseudogene -2.3219 1.0000
63126 ENSG00000251688 LINC02507 long intergenic non-protein coding RNA 2507 -2.3219 1.0000
63125 ENSG00000251649 LINC02379 long intergenic non-protein coding RNA 2379 -2.3219 1.0000
63124 ENSG00000251194 novel transcript -2.3219 0.6160
63123 ENSG00000250483 PPM1AP1 protein phosphatase, Mg2+/Mn2+ dependent 1A pseudogene 1 -2.3219 1.0000
63122 ENSG00000250326 novel transcript -2.3219 1.0000
63121 ENSG00000250099 transient receptor potential cation channel subfamily C pseudogene -2.3219 1.0000
63120 ENSG00000249620 H3P18 H3 histone pseudogene 18 -2.3219 1.0000
63119 ENSG00000249605 novel transcript -2.3219 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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