SHOGoiN Cell Methylome: GSM2042055

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042055


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M28Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252914 RNU6-789P RNA, U6 small nuclear 789, pseudogene 3.9069 0.0000
2 ENSG00000212167 RNU6-763P RNA, U6 small nuclear 763, pseudogene 3.5850 0.0000
3 ENSG00000224540 transcription factor Dp-1 (TFDP1) pseudogene 3.5850 0.0000
4 ENSG00000236610 SOCS5P1 suppressor of cytokine signaling 5 pseudogene 1 3.5850 0.0000
5 ENSG00000239149 SNORA59A small nucleolar RNA, H/ACA box 59A 3.5850 0.0000
6 ENSG00000242094 FOXP1-IT1 FOXP1 intronic transcript 1 3.4594 0.0000
7 ENSG00000257852 gamma-aminobutyric acid (GABA) A receptor, pi (GABRP) pseudogene 3.4594 0.0000
8 ENSG00000259727 novel transcript 3.4594 0.0000
9 ENSG00000267583 novel transcript 3.4594 0.0000
10 ENSG00000277855 novel transcript, antisense to FOXP1 3.4594 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000243488 RN7SL337P RNA, 7SL, cytoplasmic 337, pseudogene -2.5339 0.4071
63340 ENSG00000187912 CLEC17A C-type lectin domain containing 17A -2.5339 0.4071
63339 ENSG00000211710 TRBV4-1 T cell receptor beta variable 4-1 -2.5324 0.2598
63338 ENSG00000250133 HOXC-AS2 HOXC cluster antisense RNA 2 -2.5258 0.2525
63337 ENSG00000258602 LINC01629 long intergenic non-protein coding RNA 1629 -2.5168 0.0309
63336 ENSG00000245552 novel transcript, antisense to SESN3 -2.5161 0.0019
63335 ENSG00000233013 FAM157B family with sequence similarity 157 member B -2.5161 0.2598
63334 ENSG00000165349 SLC7A3 solute carrier family 7 member 3 -2.5161 0.2598
63333 ENSG00000272070 novel transcript -2.5145 0.0201
63332 ENSG00000235559 NOP56P1 NOP56 ribonucleoprotein pseudogene 1 -2.5133 0.0216

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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