Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042056

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2042056 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP062328	SRP062328_M29	Human oocyte DNA methylome	Methylome	Oocyte (mature metaphase (MII) stage )	Human	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000266274	RN7SL138P	RNA, 7SL, cytoplasmic 138, pseudogene	4.8580	0.0000
2	ENSG00000173389	IQCF1	IQ motif containing F1	4.7549	0.0000
3	ENSG00000228438		ribosomal protein L31 (RPL31) pseudogene	4.7004	0.0000
4	ENSG00000177352	CCDC71	coiled-coil domain containing 71	4.6439	0.0000
5	ENSG00000185909	KLHDC8B	kelch domain containing 8B	4.6439	0.0000
6	ENSG00000270776		ribosomal protein L22 (RPL22) pseudogene	4.6439	0.0000
7	ENSG00000214108	TPT1P5	tumor protein, translationally-controlled 1 pseudogene 5	4.5850	0.0000
8	ENSG00000227806	OR5W1P	olfactory receptor family 5 subfamily W member 1 pseudogene	4.5850	0.0000
9	ENSG00000283378	CNTNAP3C	contactin associated protein family member 3C	4.5850	0.0000
10	ENSG00000048405	ZNF800	zinc finger protein 800	4.5236	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000239617	RPL32P27	ribosomal protein L32 pseudogene 27	-3.3219	1.0000
63127	ENSG00000237728	CAMTA1-AS2	CAMTA1 antisense RNA 2	-3.3219	0.1651
63126	ENSG00000237592	IGKV1OR10-1	immunoglobulin kappa variable 1/OR10-1 (pseudogene)	-3.3219	0.1651
63125	ENSG00000237312		novel transcript	-3.3219	1.0000
63124	ENSG00000236483	MTND2P40	MT-ND2 pseudogene 40	-3.3219	1.0000
63123	ENSG00000235972		novel transcript	-3.3219	0.3952
63122	ENSG00000235463		Cytochrome c oxidase subunit 1 (COX1) pseudogene	-3.3219	0.0134
63121	ENSG00000235376	RPEL1	ribulose-5-phosphate-3-epimerase like 1	-3.3219	0.3952
63120	ENSG00000234688		novel transcript	-3.3219	0.0707
63119	ENSG00000234382		acyl-CoA synthetase medium-chain family member 1 (ACSM1) pseudogene	-3.3219	0.0307

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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