SHOGoiN Cell Methylome: GSM2042056
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2042056 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP062328 | SRP062328_M29 | Human oocyte DNA methylome | Methylome | Oocyte (mature metaphase (MII) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000266274 | RN7SL138P | RNA, 7SL, cytoplasmic 138, pseudogene | 4.8580 | 0.0000 |
| 2 | ENSG00000173389 | IQCF1 | IQ motif containing F1 | 4.7549 | 0.0000 |
| 3 | ENSG00000228438 | ribosomal protein L31 (RPL31) pseudogene | 4.7004 | 0.0000 | |
| 4 | ENSG00000177352 | CCDC71 | coiled-coil domain containing 71 | 4.6439 | 0.0000 |
| 5 | ENSG00000185909 | KLHDC8B | kelch domain containing 8B | 4.6439 | 0.0000 |
| 6 | ENSG00000270776 | ribosomal protein L22 (RPL22) pseudogene | 4.6439 | 0.0000 | |
| 7 | ENSG00000214108 | TPT1P5 | tumor protein, translationally-controlled 1 pseudogene 5 | 4.5850 | 0.0000 |
| 8 | ENSG00000227806 | OR5W1P | olfactory receptor family 5 subfamily W member 1 pseudogene | 4.5850 | 0.0000 |
| 9 | ENSG00000283378 | CNTNAP3C | contactin associated protein like 3C | 4.5850 | 0.0000 |
| 10 | ENSG00000048405 | ZNF800 | zinc finger protein 800 | 4.5236 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000236523 | NPM1P40 | nucleophosmin 1 pseudogene 40 | -3.4594 | 1.0000 |
| 63340 | ENSG00000236049 | LINC01920 | long intergenic non-protein coding RNA 1920 | -3.4594 | 1.0000 |
| 63339 | ENSG00000235803 | MTCO2P23 | MT-CO2 pseudogene 23 | -3.4594 | 1.0000 |
| 63338 | ENSG00000235524 | MTCO1P23 | MT-CO1 pseudogene 23 | -3.4594 | 1.0000 |
| 63337 | ENSG00000233670 | PIRT | phosphoinositide interacting regulator of transient receptor potential channels | -3.4594 | 0.0203 |
| 63336 | ENSG00000233626 | protein (peptidyl-prolyl cis\/trans isomerase) NIMA-interacting, 4 (parvulin) (PIN4) pseudogene | -3.4594 | 0.1762 | |
| 63335 | ENSG00000233517 | novel transcript | -3.4594 | 0.4082 | |
| 63334 | ENSG00000233494 | pseudogene similar to part of plasminogen (PLG) | -3.4594 | 1.0000 | |
| 63333 | ENSG00000233424 | novel transcript | -3.4594 | 0.4082 | |
| 63332 | ENSG00000233200 | LINC02634 | long intergenic non-protein coding RNA 2634 | -3.4594 | 0.4082 |
