Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2042056
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2042056
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP062328
SRP062328_M29
Human oocyte DNA methylome
Methylome
Oocyte (mature metaphase (MII) stage )
Human
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000266274
RN7SL138P
RNA, 7SL, cytoplasmic 138, pseudogene
4.8580
0.0000
2
ENSG00000173389
IQCF1
IQ motif containing F1
4.7549
0.0000
3
ENSG00000228438
ribosomal protein L31 (RPL31) pseudogene
4.7004
0.0000
4
ENSG00000177352
CCDC71
coiled-coil domain containing 71
4.6439
0.0000
5
ENSG00000185909
KLHDC8B
kelch domain containing 8B
4.6439
0.0000
6
ENSG00000270776
ribosomal protein L22 (RPL22) pseudogene
4.6439
0.0000
7
ENSG00000214108
TPT1P5
tumor protein, translationally-controlled 1 pseudogene 5
4.5850
0.0000
8
ENSG00000227806
OR5W1P
olfactory receptor family 5 subfamily W member 1 pseudogene
4.5850
0.0000
9
ENSG00000283378
CNTNAP3C
contactin associated protein family member 3C
4.5850
0.0000
10
ENSG00000048405
ZNF800
zinc finger protein 800
4.5236
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000239617
RPL32P27
ribosomal protein L32 pseudogene 27
-3.3219
1.0000
63127
ENSG00000237728
CAMTA1-AS2
CAMTA1 antisense RNA 2
-3.3219
0.1651
63126
ENSG00000237592
IGKV1OR10-1
immunoglobulin kappa variable 1/OR10-1 (pseudogene)
-3.3219
0.1651
63125
ENSG00000237312
novel transcript
-3.3219
1.0000
63124
ENSG00000236483
MTND2P40
MT-ND2 pseudogene 40
-3.3219
1.0000
63123
ENSG00000235972
novel transcript
-3.3219
0.3952
63122
ENSG00000235463
Cytochrome c oxidase subunit 1 (COX1) pseudogene
-3.3219
0.0134
63121
ENSG00000235376
RPEL1
ribulose-5-phosphate-3-epimerase like 1
-3.3219
0.3952
63120
ENSG00000234688
novel transcript
-3.3219
0.0707
63119
ENSG00000234382
acyl-CoA synthetase medium-chain family member 1 (ACSM1) pseudogene
-3.3219
0.0307
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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