SHOGoiN Cell Methylome: GSM2042056

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042056


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M29Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000266274 RN7SL138P RNA, 7SL, cytoplasmic 138, pseudogene 4.8580 0.0000
2 ENSG00000173389 IQCF1 IQ motif containing F1 4.7549 0.0000
3 ENSG00000228438 ribosomal protein L31 (RPL31) pseudogene 4.7004 0.0000
4 ENSG00000177352 CCDC71 coiled-coil domain containing 71 4.6439 0.0000
5 ENSG00000185909 KLHDC8B kelch domain containing 8B 4.6439 0.0000
6 ENSG00000270776 ribosomal protein L22 (RPL22) pseudogene 4.6439 0.0000
7 ENSG00000214108 TPT1P5 tumor protein, translationally-controlled 1 pseudogene 5 4.5850 0.0000
8 ENSG00000227806 OR5W1P olfactory receptor family 5 subfamily W member 1 pseudogene 4.5850 0.0000
9 ENSG00000283378 CNTNAP3C contactin associated protein like 3C 4.5850 0.0000
10 ENSG00000048405 ZNF800 zinc finger protein 800 4.5236 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000236523 NPM1P40 nucleophosmin 1 pseudogene 40 -3.4594 1.0000
63340 ENSG00000236049 LINC01920 long intergenic non-protein coding RNA 1920 -3.4594 1.0000
63339 ENSG00000235803 MTCO2P23 MT-CO2 pseudogene 23 -3.4594 1.0000
63338 ENSG00000235524 MTCO1P23 MT-CO1 pseudogene 23 -3.4594 1.0000
63337 ENSG00000233670 PIRT phosphoinositide interacting regulator of transient receptor potential channels -3.4594 0.0203
63336 ENSG00000233626 protein (peptidyl-prolyl cis\/trans isomerase) NIMA-interacting, 4 (parvulin) (PIN4) pseudogene -3.4594 0.1762
63335 ENSG00000233517 novel transcript -3.4594 0.4082
63334 ENSG00000233494 pseudogene similar to part of plasminogen (PLG) -3.4594 1.0000
63333 ENSG00000233424 novel transcript -3.4594 0.4082
63332 ENSG00000233200 LINC02634 long intergenic non-protein coding RNA 2634 -3.4594 0.4082

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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