Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042056

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042056


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M29Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000266274 RN7SL138P RNA, 7SL, cytoplasmic 138, pseudogene 4.8580 0.0000
2 ENSG00000173389 IQCF1 IQ motif containing F1 4.7549 0.0000
3 ENSG00000228438 ribosomal protein L31 (RPL31) pseudogene 4.7004 0.0000
4 ENSG00000177352 CCDC71 coiled-coil domain containing 71 4.6439 0.0000
5 ENSG00000185909 KLHDC8B kelch domain containing 8B 4.6439 0.0000
6 ENSG00000270776 ribosomal protein L22 (RPL22) pseudogene 4.6439 0.0000
7 ENSG00000214108 TPT1P5 tumor protein, translationally-controlled 1 pseudogene 5 4.5850 0.0000
8 ENSG00000227806 OR5W1P olfactory receptor family 5 subfamily W member 1 pseudogene 4.5850 0.0000
9 ENSG00000283378 CNTNAP3C contactin associated protein family member 3C 4.5850 0.0000
10 ENSG00000048405 ZNF800 zinc finger protein 800 4.5236 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000239617 RPL32P27 ribosomal protein L32 pseudogene 27 -3.3219 1.0000
63127 ENSG00000237728 CAMTA1-AS2 CAMTA1 antisense RNA 2 -3.3219 0.1651
63126 ENSG00000237592 IGKV1OR10-1 immunoglobulin kappa variable 1/OR10-1 (pseudogene) -3.3219 0.1651
63125 ENSG00000237312 novel transcript -3.3219 1.0000
63124 ENSG00000236483 MTND2P40 MT-ND2 pseudogene 40 -3.3219 1.0000
63123 ENSG00000235972 novel transcript -3.3219 0.3952
63122 ENSG00000235463 Cytochrome c oxidase subunit 1 (COX1) pseudogene -3.3219 0.0134
63121 ENSG00000235376 RPEL1 ribulose-5-phosphate-3-epimerase like 1 -3.3219 0.3952
63120 ENSG00000234688 novel transcript -3.3219 0.0707
63119 ENSG00000234382 acyl-CoA synthetase medium-chain family member 1 (ACSM1) pseudogene -3.3219 0.0307

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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