SHOGoiN Cell Methylome: GSM2042057

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042057


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M30Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000278636 NA 4.5236 0.0000
2 ENSG00000274367 novel transcript 4.4594 0.0000
3 ENSG00000201573 NA 4.3219 0.0000
4 ENSG00000226388 ELL2P4 elongation factor for RNA polymerase II 2 pseudogene 4 4.3219 0.0000
5 ENSG00000243546 RN7SL108P RNA, 7SL, cytoplasmic 108, pseudogene 4.3219 0.0000
6 ENSG00000273675 zinc finger protein 124 (ZNF124) pseudogene 4.3219 0.0000
7 ENSG00000160284 SPATC1L spermatogenesis and centriole associated 1 like 4.2479 0.0000
8 ENSG00000222561 RNU6-1025P RNA, U6 small nuclear 1025, pseudogene 4.2479 0.0000
9 ENSG00000228404 novel transcript 4.2479 0.0000
10 ENSG00000254335 CDH12P1 cadherin 12 pseudogene 1 4.2479 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000274718 novel transcript -3.1554 0.0008
63340 ENSG00000226356 RPS6P20 ribosomal protein S6 pseudogene 20 -3.1553 0.0026
63339 ENSG00000217825 novel transcript -3.1517 0.0000
63338 ENSG00000276707 novel transcript, antisense to LHX1 -3.1508 0.0000
63337 ENSG00000238419 RNU7-186P RNA, U7 small nuclear 186 pseudogene -3.1502 0.0000
63336 ENSG00000172867 KRT2 keratin 2 -3.1488 0.0136
63335 ENSG00000254561 novel transcript, antisense to PVRL1 -3.1465 0.0000
63334 ENSG00000280105 TEC -3.1447 0.0000
63333 ENSG00000179542 SLITRK4 SLIT and NTRK like family member 4 -3.1437 0.0000
63332 ENSG00000228997 ORM1-like (S. cerevisiae) pseudogene -3.1427 0.4044

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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