Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042057

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042057


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M30Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000278636 NA 4.5236 0.0000
2 ENSG00000274367 novel transcript 4.4594 0.0000
3 ENSG00000201573 NA 4.3219 0.0000
4 ENSG00000226388 ELL2P4 elongation factor for RNA polymerase II 2 pseudogene 4 4.3219 0.0000
5 ENSG00000243546 RN7SL108P RNA, 7SL, cytoplasmic 108, pseudogene 4.3219 0.0000
6 ENSG00000273675 zinc finger protein 124 (ZNF124) pseudogene 4.3219 0.0000
7 ENSG00000160284 SPATC1L spermatogenesis and centriole associated 1 like 4.2479 0.0000
8 ENSG00000222561 RNU6-1025P RNA, U6 small nuclear 1025, pseudogene 4.2479 0.0000
9 ENSG00000228404 novel transcript 4.2479 0.0000
10 ENSG00000254335 CDH12P1 cadherin 12 pseudogene 1 4.2479 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000273360 novel transcript, antisense to CTNNA3 -3.0000 0.2608
63220 ENSG00000273329 novel transcript -3.0000 0.3872
63219 ENSG00000271766 novel transcript -3.0000 1.0000
63218 ENSG00000271299 adenosylmethionine decarboxylase 1 (AMD1) pseudogene -3.0000 0.0450
63217 ENSG00000270920 MCRIP2P2 MAPK regulated corepressor interacting protein 2 pseudogene 2 -3.0000 1.0000
63216 ENSG00000268555 novel transcript -3.0000 1.0000
63215 ENSG00000267564 novel transcript -3.0000 0.3872
63214 ENSG00000265327 RN7SL411P RNA, 7SL, cytoplasmic 411, pseudogene -3.0000 1.0000
63213 ENSG00000264764 MIR4772 microRNA 4772 -3.0000 0.3872
63212 ENSG00000264638 MIR3152 microRNA 3152 -3.0000 0.3872

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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