Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042057

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2042057 Profile download	5030206000000000000000-755	Sequence Read Archive	SRP062328	SRP062328_M30	Human oocyte DNA methylome	Methylome	Oocyte (mature metaphase (MI) stage )	Human	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000278636		NA	4.5236	0.0000
2	ENSG00000274367		novel transcript	4.4594	0.0000
3	ENSG00000201573		NA	4.3219	0.0000
4	ENSG00000226388	ELL2P4	elongation factor for RNA polymerase II 2 pseudogene 4	4.3219	0.0000
5	ENSG00000243546	RN7SL108P	RNA, 7SL, cytoplasmic 108, pseudogene	4.3219	0.0000
6	ENSG00000273675		zinc finger protein 124 (ZNF124) pseudogene	4.3219	0.0000
7	ENSG00000160284	SPATC1L	spermatogenesis and centriole associated 1 like	4.2479	0.0000
8	ENSG00000222561	RNU6-1025P	RNA, U6 small nuclear 1025, pseudogene	4.2479	0.0000
9	ENSG00000228404		novel transcript	4.2479	0.0000
10	ENSG00000254335	CDH12P1	cadherin 12 pseudogene 1	4.2479	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63221	ENSG00000273360		novel transcript, antisense to CTNNA3	-3.0000	0.2608
63220	ENSG00000273329		novel transcript	-3.0000	0.3872
63219	ENSG00000271766		novel transcript	-3.0000	1.0000
63218	ENSG00000271299		adenosylmethionine decarboxylase 1 (AMD1) pseudogene	-3.0000	0.0450
63217	ENSG00000270920	MCRIP2P2	MAPK regulated corepressor interacting protein 2 pseudogene 2	-3.0000	1.0000
63216	ENSG00000268555		novel transcript	-3.0000	1.0000
63215	ENSG00000267564		novel transcript	-3.0000	0.3872
63214	ENSG00000265327	RN7SL411P	RNA, 7SL, cytoplasmic 411, pseudogene	-3.0000	1.0000
63213	ENSG00000264764	MIR4772	microRNA 4772	-3.0000	0.3872
63212	ENSG00000264638	MIR3152	microRNA 3152	-3.0000	0.3872

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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