Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042057

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2042057 Profile download	5030206000000000000000-755	Sequence Read Archive	SRP062328	SRP062328_M30	Human oocyte DNA methylome	Methylome	Oocyte (mature metaphase (MI) stage )	Human	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000278636		Metazoan signal recognition particle RNA	4.5236	0.0000
2	ENSG00000274367		novel transcript	4.4594	0.0000
3	ENSG00000201573		Y RNA	4.3219	0.0000
4	ENSG00000226388	ELL2P4	elongation factor for RNA polymerase II 2 pseudogene 4	4.3219	0.0000
5	ENSG00000243546	RN7SL108P	RNA, 7SL, cytoplasmic 108, pseudogene	4.3219	0.0000
6	ENSG00000273675		zinc finger protein 124 (ZNF124) pseudogene	4.3219	0.0000
7	ENSG00000160284	SPATC1L	spermatogenesis and centriole associated 1 like	4.2479	0.0000
8	ENSG00000222561	RNU6-1025P	RNA, U6 small nuclear 1025, pseudogene	4.2479	0.0000
9	ENSG00000228404		novel transcript	4.2479	0.0000
10	ENSG00000254335	CDH12P1	cadherin 12 pseudogene 1	4.2479	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000240669		ribosomal protein S14 (RPS14) pseudogene	-3.0000	1.0000
63172	ENSG00000240666	MME-AS1	MME antisense RNA 1	-3.0000	1.0000
63171	ENSG00000240534	RPL34P17	ribosomal protein L34 pseudogene 17	-3.0000	1.0000
63170	ENSG00000239659	RPL9P31	ribosomal protein L9 pseudogene 31	-3.0000	0.1071
63169	ENSG00000239390	RN7SL87P	RNA, 7SL, cytoplasmic 87, pseudogene	-3.0000	1.0000
63168	ENSG00000238628		NA	-3.0000	1.0000
63167	ENSG00000238125	SLC9A3P2	solute carrier family 9 member 3 pseudogene 2	-3.0000	0.3872
63166	ENSG00000237743	FBP2P1	fructose-bisphosphatase 2 pseudogene 1	-3.0000	0.2608
63165	ENSG00000237579	LINC01514	long intergenic non-protein coding RNA 1514	-3.0000	0.2608
63164	ENSG00000237505	PKN2-AS1	PKN2 antisense RNA 1	-3.0000	0.2608

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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