Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042057

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042057


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M30Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000278636 Metazoan signal recognition particle RNA 4.5236 0.0000
2 ENSG00000274367 novel transcript 4.4594 0.0000
3 ENSG00000201573 Y RNA 4.3219 0.0000
4 ENSG00000226388 ELL2P4 elongation factor for RNA polymerase II 2 pseudogene 4 4.3219 0.0000
5 ENSG00000243546 RN7SL108P RNA, 7SL, cytoplasmic 108, pseudogene 4.3219 0.0000
6 ENSG00000273675 zinc finger protein 124 (ZNF124) pseudogene 4.3219 0.0000
7 ENSG00000160284 SPATC1L spermatogenesis and centriole associated 1 like 4.2479 0.0000
8 ENSG00000222561 RNU6-1025P RNA, U6 small nuclear 1025, pseudogene 4.2479 0.0000
9 ENSG00000228404 novel transcript 4.2479 0.0000
10 ENSG00000254335 CDH12P1 cadherin 12 pseudogene 1 4.2479 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000240669 ribosomal protein S14 (RPS14) pseudogene -3.0000 1.0000
63172 ENSG00000240666 MME-AS1 MME antisense RNA 1 -3.0000 1.0000
63171 ENSG00000240534 RPL34P17 ribosomal protein L34 pseudogene 17 -3.0000 1.0000
63170 ENSG00000239659 RPL9P31 ribosomal protein L9 pseudogene 31 -3.0000 0.1071
63169 ENSG00000239390 RN7SL87P RNA, 7SL, cytoplasmic 87, pseudogene -3.0000 1.0000
63168 ENSG00000238628 NA -3.0000 1.0000
63167 ENSG00000238125 SLC9A3P2 solute carrier family 9 member 3 pseudogene 2 -3.0000 0.3872
63166 ENSG00000237743 FBP2P1 fructose-bisphosphatase 2 pseudogene 1 -3.0000 0.2608
63165 ENSG00000237579 LINC01514 long intergenic non-protein coding RNA 1514 -3.0000 0.2608
63164 ENSG00000237505 PKN2-AS1 PKN2 antisense RNA 1 -3.0000 0.2608

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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