Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2042057
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2042057
Profile download
5030206000000000000000-755
Sequence Read Archive
SRP062328
SRP062328_M30
Human oocyte DNA methylome
Methylome
Oocyte (mature metaphase (MI) stage )
Human
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000278636
Metazoan signal recognition particle RNA
4.5236
0.0000
2
ENSG00000274367
novel transcript
4.4594
0.0000
3
ENSG00000201573
Y RNA
4.3219
0.0000
4
ENSG00000226388
ELL2P4
elongation factor for RNA polymerase II 2 pseudogene 4
4.3219
0.0000
5
ENSG00000243546
RN7SL108P
RNA, 7SL, cytoplasmic 108, pseudogene
4.3219
0.0000
6
ENSG00000273675
zinc finger protein 124 (ZNF124) pseudogene
4.3219
0.0000
7
ENSG00000160284
SPATC1L
spermatogenesis and centriole associated 1 like
4.2479
0.0000
8
ENSG00000222561
RNU6-1025P
RNA, U6 small nuclear 1025, pseudogene
4.2479
0.0000
9
ENSG00000228404
novel transcript
4.2479
0.0000
10
ENSG00000254335
CDH12P1
cadherin 12 pseudogene 1
4.2479
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000240669
ribosomal protein S14 (RPS14) pseudogene
-3.0000
1.0000
63172
ENSG00000240666
MME-AS1
MME antisense RNA 1
-3.0000
1.0000
63171
ENSG00000240534
RPL34P17
ribosomal protein L34 pseudogene 17
-3.0000
1.0000
63170
ENSG00000239659
RPL9P31
ribosomal protein L9 pseudogene 31
-3.0000
0.1071
63169
ENSG00000239390
RN7SL87P
RNA, 7SL, cytoplasmic 87, pseudogene
-3.0000
1.0000
63168
ENSG00000238628
NA
-3.0000
1.0000
63167
ENSG00000238125
SLC9A3P2
solute carrier family 9 member 3 pseudogene 2
-3.0000
0.3872
63166
ENSG00000237743
FBP2P1
fructose-bisphosphatase 2 pseudogene 1
-3.0000
0.2608
63165
ENSG00000237579
LINC01514
long intergenic non-protein coding RNA 1514
-3.0000
0.2608
63164
ENSG00000237505
PKN2-AS1
PKN2 antisense RNA 1
-3.0000
0.2608
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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