SHOGoiN Cell Methylome: GSM2042057
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2042057 Profile download | 5030206000000000000000-755 | Sequence Read Archive | SRP062328 | SRP062328_M30 | Human oocyte DNA methylome | Methylome | Oocyte (mature metaphase (MI) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000278636 | NA | 4.5236 | 0.0000 | |
| 2 | ENSG00000274367 | novel transcript | 4.4594 | 0.0000 | |
| 3 | ENSG00000201573 | NA | 4.3219 | 0.0000 | |
| 4 | ENSG00000226388 | ELL2P4 | elongation factor for RNA polymerase II 2 pseudogene 4 | 4.3219 | 0.0000 |
| 5 | ENSG00000243546 | RN7SL108P | RNA, 7SL, cytoplasmic 108, pseudogene | 4.3219 | 0.0000 |
| 6 | ENSG00000273675 | zinc finger protein 124 (ZNF124) pseudogene | 4.3219 | 0.0000 | |
| 7 | ENSG00000160284 | SPATC1L | spermatogenesis and centriole associated 1 like | 4.2479 | 0.0000 |
| 8 | ENSG00000222561 | RNU6-1025P | RNA, U6 small nuclear 1025, pseudogene | 4.2479 | 0.0000 |
| 9 | ENSG00000228404 | novel transcript | 4.2479 | 0.0000 | |
| 10 | ENSG00000254335 | CDH12P1 | cadherin 12 pseudogene 1 | 4.2479 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000274718 | novel transcript | -3.1554 | 0.0008 | |
| 63340 | ENSG00000226356 | RPS6P20 | ribosomal protein S6 pseudogene 20 | -3.1553 | 0.0026 |
| 63339 | ENSG00000217825 | novel transcript | -3.1517 | 0.0000 | |
| 63338 | ENSG00000276707 | novel transcript, antisense to LHX1 | -3.1508 | 0.0000 | |
| 63337 | ENSG00000238419 | RNU7-186P | RNA, U7 small nuclear 186 pseudogene | -3.1502 | 0.0000 |
| 63336 | ENSG00000172867 | KRT2 | keratin 2 | -3.1488 | 0.0136 |
| 63335 | ENSG00000254561 | novel transcript, antisense to PVRL1 | -3.1465 | 0.0000 | |
| 63334 | ENSG00000280105 | TEC | -3.1447 | 0.0000 | |
| 63333 | ENSG00000179542 | SLITRK4 | SLIT and NTRK like family member 4 | -3.1437 | 0.0000 |
| 63332 | ENSG00000228997 | ORM1-like (S. cerevisiae) pseudogene | -3.1427 | 0.4044 |
