SHOGoiN Cell Methylome: GSM2146951

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2146951


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M1Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000280191 LINC01669 long intergenic non-protein coding RNA 1669 3.4594 0.0000
2 ENSG00000200478 SNORD115-41 small nucleolar RNA, C/D box 115-41 2.8074 0.0000
3 ENSG00000265442 MIR3941 microRNA 3941 2.8074 0.0000
4 ENSG00000224323 DPRXP1 divergent-paired related homeobox pseudogene 1 2.5850 0.0001
5 ENSG00000243733 novel transcript 2.5850 0.0000
6 ENSG00000255790 novel transcript 2.5850 0.0001
7 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5294 0.0000
8 ENSG00000258752 novel transcript, antisense to FOXN3 2.5118 0.0000
9 ENSG00000272460 SNORD115-40 small nucleolar RNA, C/D box 115-40 2.3955 0.0000
10 ENSG00000119321 FKBP15 FKBP prolyl isomerase 15 2.3219 0.0008

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000255867 DENND5B-AS1 DENND5B antisense RNA 1 -1.7141 0.0000
63340 ENSG00000252390 RNU5F-4P RNA, U5F small nuclear 4, pseudogene -1.7141 0.0000
63339 ENSG00000231788 RPL31P50 ribosomal protein L31 pseudogene 50 -1.7141 0.0000
63338 ENSG00000280318 novel transcript -1.7127 0.0062
63337 ENSG00000238038 ATP6V0E1P3 ATPase H+ transporting V0 subunit e1 pseudogene 3 -1.7123 0.0004
63336 ENSG00000265962 GACAT2 gastric cancer associated transcript 2 -1.7113 0.0000
63335 ENSG00000165312 OTUD1 OTU deubiquitinase 1 -1.7098 0.0001
63334 ENSG00000112378 PERP p53 apoptosis effector related to PMP22 -1.7095 0.0000
63333 ENSG00000107819 SFXN3 sideroflexin 3 -1.7093 0.0000
63332 ENSG00000279725 TEC -1.7091 0.0299

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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