Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2146951

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2146951


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M1Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000280191 LINC01669 long intergenic non-protein coding RNA 1669 3.4594 0.0000
2 ENSG00000200478 SNORD115-41 small nucleolar RNA, C/D box 115-41 2.8074 0.0000
3 ENSG00000265442 MIR3941 microRNA 3941 2.8074 0.0000
4 ENSG00000224323 DPRXP1 divergent-paired related homeobox pseudogene 1 2.5850 0.0001
5 ENSG00000243733 novel transcript 2.5850 0.0000
6 ENSG00000255790 novel transcript 2.5850 0.0001
7 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5294 0.0000
8 ENSG00000258752 novel transcript, antisense to FOXN3 2.5118 0.0000
9 ENSG00000272460 SNORD115-40 small nucleolar RNA, C/D box 115-40 2.3955 0.0000
10 ENSG00000119321 FKBP15 FKBP prolyl isomerase family member 15 2.3219 0.0008

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000236581 STARD13-AS STARD13 antisense RNA -1.6129 0.0002
63127 ENSG00000086288 NME8 NME/NM23 family member 8 -1.6122 0.0133
63126 ENSG00000233419 IFITM3P7 IFITM3 pseudogene 7 -1.6122 0.0597
63125 ENSG00000213096 ZNF254 zinc finger protein 254 -1.6119 0.0004
63124 ENSG00000138207 RBP4 retinol binding protein 4 -1.6100 0.0000
63123 ENSG00000164116 GUCY1A1 guanylate cyclase 1 soluble subunit alpha 1 -1.6097 0.0007
63122 ENSG00000164010 ERMAP erythroblast membrane associated protein (Scianna blood group) -1.6097 0.0388
63121 ENSG00000213169 ribosomal protein L8 (RPL8) pseudogene -1.6095 0.0373
63120 ENSG00000108511 HOXB6 homeobox B6 -1.6093 0.0000
63119 ENSG00000196660 SLC30A10 solute carrier family 30 member 10 -1.6090 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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