SHOGoiN Cell Methylome: GSM2146952
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2146952 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP074598 | SRP074598_M2 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Metaphase II oocyte | Human | Genitalia | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000265442 | MIR3941 | microRNA 3941 | 2.8074 | 0.0001 |
| 2 | ENSG00000206228 | HNRNPA1P4 | heterogeneous nuclear ribonucleoprotein A1 pseudogene 4 | 2.5850 | 0.0000 |
| 3 | ENSG00000253958 | CLDN23 | claudin 23 | 2.5490 | 0.0000 |
| 4 | ENSG00000222248 | RNA5SP201 | RNA, 5S ribosomal pseudogene 201 | 2.3900 | 0.0000 |
| 5 | ENSG00000283402 | mitochondrially encoded cytochrome b (MT-CYB) pseudogene | 2.3900 | 0.0000 | |
| 6 | ENSG00000280191 | LINC01669 | long intergenic non-protein coding RNA 1669 | 2.3248 | 0.0000 |
| 7 | ENSG00000118873 | RAB3GAP2 | RAB3 GTPase activating non-catalytic protein subunit 2 | 2.3219 | 0.0000 |
| 8 | ENSG00000135413 | LACRT | lacritin | 2.3219 | 0.0025 |
| 9 | ENSG00000162613 | FUBP1 | far upstream element binding protein 1 | 2.3219 | 0.0000 |
| 10 | ENSG00000181552 | EDDM3B | epididymal protein 3B | 2.3219 | 0.0025 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000174989 | FBXW8 | F-box and WD repeat domain containing 8 | -1.7143 | 0.0003 |
| 63340 | ENSG00000184811 | TRARG1 | trafficking regulator of GLUT4 (SLC2A4) 1 | -1.7136 | 0.0000 |
| 63339 | ENSG00000242599 | CSAG4 | CSAG family member 4 (pseudogene) | -1.7136 | 0.0018 |
| 63338 | ENSG00000232406 | novel transcript, antisense to EPB41L1 | -1.7130 | 0.0000 | |
| 63337 | ENSG00000279151 | novel transcript | -1.7119 | 0.0000 | |
| 63336 | ENSG00000185338 | SOCS1 | suppressor of cytokine signaling 1 | -1.7117 | 0.0000 |
| 63335 | ENSG00000099992 | TBC1D10A | TBC1 domain family member 10A | -1.7112 | 0.0000 |
| 63334 | ENSG00000224513 | novel transcript | -1.7103 | 0.0000 | |
| 63333 | ENSG00000269038 | novel transcript | -1.7102 | 0.0000 | |
| 63332 | ENSG00000237605 | novel transcript | -1.7100 | 0.0000 |
