SHOGoiN Cell Methylome: GSM2146952

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2146952


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M2Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000265442 MIR3941 microRNA 3941 2.8074 0.0001
2 ENSG00000206228 HNRNPA1P4 heterogeneous nuclear ribonucleoprotein A1 pseudogene 4 2.5850 0.0000
3 ENSG00000253958 CLDN23 claudin 23 2.5490 0.0000
4 ENSG00000222248 RNA5SP201 RNA, 5S ribosomal pseudogene 201 2.3900 0.0000
5 ENSG00000283402 mitochondrially encoded cytochrome b (MT-CYB) pseudogene 2.3900 0.0000
6 ENSG00000280191 LINC01669 long intergenic non-protein coding RNA 1669 2.3248 0.0000
7 ENSG00000118873 RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 2.3219 0.0000
8 ENSG00000135413 LACRT lacritin 2.3219 0.0025
9 ENSG00000162613 FUBP1 far upstream element binding protein 1 2.3219 0.0000
10 ENSG00000181552 EDDM3B epididymal protein 3B 2.3219 0.0025

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000174989 FBXW8 F-box and WD repeat domain containing 8 -1.7143 0.0003
63340 ENSG00000184811 TRARG1 trafficking regulator of GLUT4 (SLC2A4) 1 -1.7136 0.0000
63339 ENSG00000242599 CSAG4 CSAG family member 4 (pseudogene) -1.7136 0.0018
63338 ENSG00000232406 novel transcript, antisense to EPB41L1 -1.7130 0.0000
63337 ENSG00000279151 novel transcript -1.7119 0.0000
63336 ENSG00000185338 SOCS1 suppressor of cytokine signaling 1 -1.7117 0.0000
63335 ENSG00000099992 TBC1D10A TBC1 domain family member 10A -1.7112 0.0000
63334 ENSG00000224513 novel transcript -1.7103 0.0000
63333 ENSG00000269038 novel transcript -1.7102 0.0000
63332 ENSG00000237605 novel transcript -1.7100 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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