Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2146952
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2146952
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP074598
SRP074598_M2
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Metaphase II oocyte
Human
Genitalia
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000265442
MIR3941
microRNA 3941
2.8074
0.0001
2
ENSG00000206228
HNRNPA1P4
heterogeneous nuclear ribonucleoprotein A1 pseudogene 4
2.5850
0.0000
3
ENSG00000253958
CLDN23
claudin 23
2.5490
0.0000
4
ENSG00000222248
RNA5SP201
RNA, 5S ribosomal pseudogene 201
2.3900
0.0000
5
ENSG00000283402
mitochondrially encoded cytochrome b (MT-CYB) pseudogene
2.3900
0.0000
6
ENSG00000280191
LINC01669
long intergenic non-protein coding RNA 1669
2.3248
0.0000
7
ENSG00000118873
RAB3GAP2
RAB3 GTPase activating non-catalytic protein subunit 2
2.3219
0.0000
8
ENSG00000135413
LACRT
lacritin
2.3219
0.0025
9
ENSG00000162613
FUBP1
far upstream element binding protein 1
2.3219
0.0000
10
ENSG00000181552
EDDM3B
epididymal protein 3B
2.3219
0.0025
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000197763
TXNRD3
thioredoxin reductase 3
-1.6236
0.0000
63127
ENSG00000241990
PRR34-AS1
PRR34 antisense RNA 1
-1.6236
0.0000
63126
ENSG00000158301
GPRASP2
G protein-coupled receptor associated sorting protein 2
-1.6234
0.0000
63125
ENSG00000186895
FGF3
fibroblast growth factor 3
-1.6224
0.0000
63124
ENSG00000171763
SPATA5L1
spermatogenesis associated 5 like 1
-1.6213
0.0000
63123
ENSG00000153094
BCL2L11
BCL2 like 11
-1.6209
0.0000
63122
ENSG00000266643
MIR3677
microRNA 3677
-1.6203
0.0000
63121
ENSG00000260778
novel transcript
-1.6203
0.0000
63120
ENSG00000100625
SIX4
SIX homeobox 4
-1.6201
0.0000
63119
ENSG00000183250
LINC01547
long intergenic non-protein coding RNA 1547
-1.6200
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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