Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2146952

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2146952


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M2Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000265442 MIR3941 microRNA 3941 2.8074 0.0001
2 ENSG00000206228 HNRNPA1P4 heterogeneous nuclear ribonucleoprotein A1 pseudogene 4 2.5850 0.0000
3 ENSG00000253958 CLDN23 claudin 23 2.5490 0.0000
4 ENSG00000222248 RNA5SP201 RNA, 5S ribosomal pseudogene 201 2.3900 0.0000
5 ENSG00000283402 mitochondrially encoded cytochrome b (MT-CYB) pseudogene 2.3900 0.0000
6 ENSG00000280191 LINC01669 long intergenic non-protein coding RNA 1669 2.3248 0.0000
7 ENSG00000118873 RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 2.3219 0.0000
8 ENSG00000135413 LACRT lacritin 2.3219 0.0025
9 ENSG00000162613 FUBP1 far upstream element binding protein 1 2.3219 0.0000
10 ENSG00000181552 EDDM3B epididymal protein 3B 2.3219 0.0025

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000197763 TXNRD3 thioredoxin reductase 3 -1.6236 0.0000
63127 ENSG00000241990 PRR34-AS1 PRR34 antisense RNA 1 -1.6236 0.0000
63126 ENSG00000158301 GPRASP2 G protein-coupled receptor associated sorting protein 2 -1.6234 0.0000
63125 ENSG00000186895 FGF3 fibroblast growth factor 3 -1.6224 0.0000
63124 ENSG00000171763 SPATA5L1 spermatogenesis associated 5 like 1 -1.6213 0.0000
63123 ENSG00000153094 BCL2L11 BCL2 like 11 -1.6209 0.0000
63122 ENSG00000266643 MIR3677 microRNA 3677 -1.6203 0.0000
63121 ENSG00000260778 novel transcript -1.6203 0.0000
63120 ENSG00000100625 SIX4 SIX homeobox 4 -1.6201 0.0000
63119 ENSG00000183250 LINC01547 long intergenic non-protein coding RNA 1547 -1.6200 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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