Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2146952

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2146952 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP074598	SRP074598_M2	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Metaphase II oocyte	Human	Genitalia	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000265442	MIR3941	microRNA 3941	2.8074	0.0001
2	ENSG00000206228	HNRNPA1P4	heterogeneous nuclear ribonucleoprotein A1 pseudogene 4	2.5850	0.0000
3	ENSG00000253958	CLDN23	claudin 23	2.5490	0.0000
4	ENSG00000222248	RNA5SP201	RNA, 5S ribosomal pseudogene 201	2.3900	0.0000
5	ENSG00000283402		mitochondrially encoded cytochrome b (MT-CYB) pseudogene	2.3900	0.0000
6	ENSG00000280191	LINC01669	long intergenic non-protein coding RNA 1669	2.3248	0.0000
7	ENSG00000118873	RAB3GAP2	RAB3 GTPase activating non-catalytic protein subunit 2	2.3219	0.0000
8	ENSG00000135413	LACRT	lacritin	2.3219	0.0025
9	ENSG00000162613	FUBP1	far upstream element binding protein 1	2.3219	0.0000
10	ENSG00000181552	EDDM3B	epididymal protein 3B	2.3219	0.0025

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000197763	TXNRD3	thioredoxin reductase 3	-1.6236	0.0000
63127	ENSG00000241990	PRR34-AS1	PRR34 antisense RNA 1	-1.6236	0.0000
63126	ENSG00000158301	GPRASP2	G protein-coupled receptor associated sorting protein 2	-1.6234	0.0000
63125	ENSG00000186895	FGF3	fibroblast growth factor 3	-1.6224	0.0000
63124	ENSG00000171763	SPATA5L1	spermatogenesis associated 5 like 1	-1.6213	0.0000
63123	ENSG00000153094	BCL2L11	BCL2 like 11	-1.6209	0.0000
63122	ENSG00000266643	MIR3677	microRNA 3677	-1.6203	0.0000
63121	ENSG00000260778		novel transcript	-1.6203	0.0000
63120	ENSG00000100625	SIX4	SIX homeobox 4	-1.6201	0.0000
63119	ENSG00000183250	LINC01547	long intergenic non-protein coding RNA 1547	-1.6200	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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