SHOGoiN Cell Methylome: GSM2146953

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2146953


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M3Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000116191 RALGPS2 Ral GEF with PH domain and SH3 binding motif 2 2.5850 0.0000
2 ENSG00000222546 RNA5SP251 RNA, 5S ribosomal pseudogene 251 2.5850 0.0005
3 ENSG00000223941 LINC01014 long intergenic non-protein coding RNA 1014 2.5850 0.0005
4 ENSG00000228981 ribosomal protein S2 (RPS2) pseudogene 2.5850 0.0005
5 ENSG00000275163 potassium large conductance calcium-activated channel, subfamily M, beta member 2 (KCNMB2-IT1 - KCNMB2 readthrough transcript) 2.5850 0.0005
6 ENSG00000230975 novel transcript 2.5569 0.0000
7 ENSG00000214626 POLR3DP1 RNA polymerase III subunit D pseudogene 1 2.4534 0.0000
8 ENSG00000164220 F2RL2 coagulation factor II thrombin receptor like 2 2.3219 0.0000
9 ENSG00000201077 RNU6-188P RNA, U6 small nuclear 188, pseudogene 2.3219 0.0021
10 ENSG00000206807 RNU6-815P RNA, U6 small nuclear 815, pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000230246 SPATA31C1 SPATA31 subfamily C member 1 -1.7633 0.0006
63340 ENSG00000248216 KCTD9P5 potassium channel tetramerization domain containing 9 pseudogene 5 -1.7621 0.0449
63339 ENSG00000253736 novel transcript, antisense to DUSP1 -1.7604 0.0000
63338 ENSG00000282964 novel transcript, sense intronic to PAH -1.7600 0.0001
63337 ENSG00000139352 ASCL1 achaete-scute family bHLH transcription factor 1 -1.7600 0.0001
63336 ENSG00000254102 novel transcript -1.7591 0.0000
63335 ENSG00000236651 DLX2-DT DLX2 divergent transcript -1.7585 0.0000
63334 ENSG00000002745 WNT16 Wnt family member 16 -1.7585 0.0986
63333 ENSG00000173275 ZNF449 zinc finger protein 449 -1.7582 0.0034
63332 ENSG00000275180 novel transcript -1.7580 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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