Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2146953

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2146953


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M3Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000116191 RALGPS2 Ral GEF with PH domain and SH3 binding motif 2 2.5850 0.0000
2 ENSG00000222546 RNA5SP251 RNA, 5S ribosomal pseudogene 251 2.5850 0.0005
3 ENSG00000223941 LINC01014 long intergenic non-protein coding RNA 1014 2.5850 0.0005
4 ENSG00000228981 ribosomal protein S2 (RPS2) pseudogene 2.5850 0.0005
5 ENSG00000275163 potassium large conductance calcium-activated channel, subfamily M, beta member 2 (KCNMB2-IT1 - KCNMB2 readthrough transcript) 2.5850 0.0005
6 ENSG00000230975 novel transcript 2.5569 0.0000
7 ENSG00000214626 POLR3DP1 RNA polymerase III subunit D pseudogene 1 2.4534 0.0000
8 ENSG00000164220 F2RL2 coagulation factor II thrombin receptor like 2 2.3219 0.0000
9 ENSG00000201077 RNU6-188P RNA, U6 small nuclear 188, pseudogene 2.3219 0.0021
10 ENSG00000206807 RNU6-815P RNA, U6 small nuclear 815, pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000253910 PCDHGB2 protocadherin gamma subfamily B, 2 -1.6658 0.0000
63127 ENSG00000174032 SLC25A30 solute carrier family 25 member 30 -1.6655 0.0000
63126 ENSG00000252891 Y RNA -1.6649 0.0000
63125 ENSG00000204177 BMS1P1 BMS1 pseudogene 1 -1.6644 0.0000
63124 ENSG00000164794 KCNV1 potassium voltage-gated channel modifier subfamily V member 1 -1.6640 0.0000
63123 ENSG00000185065 novel transcript, antisense to C22orf39 -1.6630 0.0000
63122 ENSG00000230989 HSBP1 heat shock factor binding protein 1 -1.6628 0.0000
63121 ENSG00000141668 CBLN2 cerebellin 2 precursor -1.6620 0.0000
63120 ENSG00000187231 SESTD1 SEC14 and spectrin domain containing 1 -1.6620 0.0000
63119 ENSG00000198169 ZNF251 zinc finger protein 251 -1.6615 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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