SHOGoiN Cell Methylome: GSM2146954

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2146954


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M4Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236056 GAPDHP14 glyceraldehyde-3-phosphate dehydrogenase pseudogene 14 2.8074 0.0000
2 ENSG00000233531 DEFA10P defensin alpha 10, pseudogene 2.5850 0.0000
3 ENSG00000256037 MRPL40P1 mitochondrial ribosomal protein L40 pseudogene 1 2.5850 0.0000
4 ENSG00000258608 DNAJC19P9 DnaJ heat shock protein family (Hsp40) member C19 pseudogene 9 2.5850 0.0002
6 ENSG00000273444 methionyl aminopeptidase 2 (METAP2) pseudogene 2.5850 0.0002
7 ENSG00000279125 TEC 2.5850 0.0000
8 ENSG00000271533 novel transcript, sense intronic FTX 2.4459 0.0000
9 ENSG00000256963 pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) ( PPDPF) pseudogene 2.4132 0.0000
10 ENSG00000107758 PPP3CB protein phosphatase 3 catalytic subunit beta 2.3627 0.0000
63332 ENSG00000275152 CCL16 C-C motif chemokine ligand 16 -1.7740 0.0935

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000262408 family with sequence similarity 89, member B (FAM89B) pseudogene -1.7778 0.0241
63340 ENSG00000254941 ring finger protein 181 (RNF181) pseudogene -1.7767 0.0000
63339 ENSG00000245498 novel transcript, antisense to C11orf61 -1.7767 0.0000
63338 ENSG00000185668 POU3F1 POU class 3 homeobox 1 -1.7761 0.0000
63337 ENSG00000101230 ISM1 isthmin 1 -1.7760 0.0000
63336 ENSG00000167740 CYB5D2 cytochrome b5 domain containing 2 -1.7757 0.0000
63335 ENSG00000113318 MSH3 mutS homolog 3 -1.7755 0.0000
63334 ENSG00000267604 novel transcript, antisense to chromosome 17 open reading frame 105 -1.7754 0.0000
63333 ENSG00000269993 novel transcript -1.7745 0.0000
63332 ENSG00000275152 CCL16 C-C motif chemokine ligand 16 -1.7740 0.0935

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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