Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2146954
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2146954
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP074598
SRP074598_M4
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Metaphase II oocyte
Human
Genitalia
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000236056
GAPDHP14
glyceraldehyde-3-phosphate dehydrogenase pseudogene 14
2.8074
0.0000
2
ENSG00000233531
DEFA10P
defensin alpha 10, pseudogene
2.5850
0.0000
3
ENSG00000256037
MRPL40P1
mitochondrial ribosomal protein L40 pseudogene 1
2.5850
0.0000
4
ENSG00000258608
DNAJC19P9
DnaJ heat shock protein family (Hsp40) member C19 pseudogene 9
2.5850
0.0002
6
ENSG00000273444
methionyl aminopeptidase 2 (METAP2) pseudogene
2.5850
0.0002
7
ENSG00000279125
TEC
2.5850
0.0000
8
ENSG00000271533
novel transcript, sense intronic FTX
2.4459
0.0000
9
ENSG00000256963
pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) ( PPDPF) pseudogene
2.4132
0.0000
10
ENSG00000107758
PPP3CB
protein phosphatase 3 catalytic subunit beta
2.3627
0.0000
63119
ENSG00000168116
KIAA1586
KIAA1586
-1.6667
0.6152
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000266570
MIR5579
microRNA 5579
-1.6667
0.6152
63127
ENSG00000250550
PPBPP1
pro-platelet basic protein pseudogene 1
-1.6667
0.6152
63126
ENSG00000240487
FAM214BP1
FAM214B pseudogene 1
-1.6667
0.6152
63125
ENSG00000239984
RN7SL420P
RNA, 7SL, cytoplasmic 420, pseudogene
-1.6667
0.6152
63124
ENSG00000232268
OR52I1
olfactory receptor family 52 subfamily I member 1
-1.6667
0.6152
63123
ENSG00000226483
ribosomal protein L7-like 1 (RPL7L1) pseudogene
-1.6667
0.6152
63122
ENSG00000217327
RPS7P5
ribosomal protein S7 pseudogene 5
-1.6667
0.1511
63121
ENSG00000201633
Y RNA
-1.6667
0.0388
63120
ENSG00000174255
ZNF80
zinc finger protein 80
-1.6667
0.6152
63119
ENSG00000168116
KIAA1586
KIAA1586
-1.6667
0.6152
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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