Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2146954

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2146954


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M4Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236056 GAPDHP14 glyceraldehyde-3-phosphate dehydrogenase pseudogene 14 2.8074 0.0000
2 ENSG00000233531 DEFA10P defensin alpha 10, pseudogene 2.5850 0.0000
3 ENSG00000256037 MRPL40P1 mitochondrial ribosomal protein L40 pseudogene 1 2.5850 0.0000
4 ENSG00000258608 DNAJC19P9 DnaJ heat shock protein family (Hsp40) member C19 pseudogene 9 2.5850 0.0002
6 ENSG00000273444 methionyl aminopeptidase 2 (METAP2) pseudogene 2.5850 0.0002
7 ENSG00000279125 TEC 2.5850 0.0000
8 ENSG00000271533 novel transcript, sense intronic FTX 2.4459 0.0000
9 ENSG00000256963 pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) ( PPDPF) pseudogene 2.4132 0.0000
10 ENSG00000107758 PPP3CB protein phosphatase 3 catalytic subunit beta 2.3627 0.0000
63119 ENSG00000168116 KIAA1586 KIAA1586 -1.6667 0.6152

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000266570 MIR5579 microRNA 5579 -1.6667 0.6152
63127 ENSG00000250550 PPBPP1 pro-platelet basic protein pseudogene 1 -1.6667 0.6152
63126 ENSG00000240487 FAM214BP1 FAM214B pseudogene 1 -1.6667 0.6152
63125 ENSG00000239984 RN7SL420P RNA, 7SL, cytoplasmic 420, pseudogene -1.6667 0.6152
63124 ENSG00000232268 OR52I1 olfactory receptor family 52 subfamily I member 1 -1.6667 0.6152
63123 ENSG00000226483 ribosomal protein L7-like 1 (RPL7L1) pseudogene -1.6667 0.6152
63122 ENSG00000217327 RPS7P5 ribosomal protein S7 pseudogene 5 -1.6667 0.1511
63121 ENSG00000201633 Y RNA -1.6667 0.0388
63120 ENSG00000174255 ZNF80 zinc finger protein 80 -1.6667 0.6152
63119 ENSG00000168116 KIAA1586 KIAA1586 -1.6667 0.6152

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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