SHOGoiN Cell Methylome: GSM2146954
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2146954 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP074598 | SRP074598_M4 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Metaphase II oocyte | Human | Genitalia | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000236056 | GAPDHP14 | glyceraldehyde-3-phosphate dehydrogenase pseudogene 14 | 2.8074 | 0.0000 |
| 2 | ENSG00000233531 | DEFA10P | defensin alpha 10, pseudogene | 2.5850 | 0.0000 |
| 3 | ENSG00000256037 | MRPL40P1 | mitochondrial ribosomal protein L40 pseudogene 1 | 2.5850 | 0.0000 |
| 4 | ENSG00000258608 | DNAJC19P9 | DnaJ heat shock protein family (Hsp40) member C19 pseudogene 9 | 2.5850 | 0.0002 |
| 6 | ENSG00000273444 | methionyl aminopeptidase 2 (METAP2) pseudogene | 2.5850 | 0.0002 | |
| 7 | ENSG00000279125 | TEC | 2.5850 | 0.0000 | |
| 8 | ENSG00000271533 | novel transcript, sense intronic FTX | 2.4459 | 0.0000 | |
| 9 | ENSG00000256963 | pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) ( PPDPF) pseudogene | 2.4132 | 0.0000 | |
| 10 | ENSG00000107758 | PPP3CB | protein phosphatase 3 catalytic subunit beta | 2.3627 | 0.0000 |
| 63332 | ENSG00000275152 | CCL16 | C-C motif chemokine ligand 16 | -1.7740 | 0.0935 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000262408 | family with sequence similarity 89, member B (FAM89B) pseudogene | -1.7778 | 0.0241 | |
| 63340 | ENSG00000254941 | ring finger protein 181 (RNF181) pseudogene | -1.7767 | 0.0000 | |
| 63339 | ENSG00000245498 | novel transcript, antisense to C11orf61 | -1.7767 | 0.0000 | |
| 63338 | ENSG00000185668 | POU3F1 | POU class 3 homeobox 1 | -1.7761 | 0.0000 |
| 63337 | ENSG00000101230 | ISM1 | isthmin 1 | -1.7760 | 0.0000 |
| 63336 | ENSG00000167740 | CYB5D2 | cytochrome b5 domain containing 2 | -1.7757 | 0.0000 |
| 63335 | ENSG00000113318 | MSH3 | mutS homolog 3 | -1.7755 | 0.0000 |
| 63334 | ENSG00000267604 | novel transcript, antisense to chromosome 17 open reading frame 105 | -1.7754 | 0.0000 | |
| 63333 | ENSG00000269993 | novel transcript | -1.7745 | 0.0000 | |
| 63332 | ENSG00000275152 | CCL16 | C-C motif chemokine ligand 16 | -1.7740 | 0.0935 |
