Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2146954

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2146954 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP074598	SRP074598_M4	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Metaphase II oocyte	Human	Genitalia	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000236056	GAPDHP14	glyceraldehyde-3-phosphate dehydrogenase pseudogene 14	2.8074	0.0000
2	ENSG00000233531	DEFA10P	defensin alpha 10, pseudogene	2.5850	0.0000
3	ENSG00000256037	MRPL40P1	mitochondrial ribosomal protein L40 pseudogene 1	2.5850	0.0000
4	ENSG00000258608	DNAJC19P9	DnaJ heat shock protein family (Hsp40) member C19 pseudogene 9	2.5850	0.0002
6	ENSG00000273444		methionyl aminopeptidase 2 (METAP2) pseudogene	2.5850	0.0002
7	ENSG00000279125		TEC	2.5850	0.0000
8	ENSG00000271533		novel transcript, sense intronic FTX	2.4459	0.0000
9	ENSG00000256963		pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) ( PPDPF) pseudogene	2.4132	0.0000
10	ENSG00000107758	PPP3CB	protein phosphatase 3 catalytic subunit beta	2.3627	0.0000
63119	ENSG00000168116	KIAA1586	KIAA1586	-1.6667	0.6152

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000266570	MIR5579	microRNA 5579	-1.6667	0.6152
63127	ENSG00000250550	PPBPP1	pro-platelet basic protein pseudogene 1	-1.6667	0.6152
63126	ENSG00000240487	FAM214BP1	FAM214B pseudogene 1	-1.6667	0.6152
63125	ENSG00000239984	RN7SL420P	RNA, 7SL, cytoplasmic 420, pseudogene	-1.6667	0.6152
63124	ENSG00000232268	OR52I1	olfactory receptor family 52 subfamily I member 1	-1.6667	0.6152
63123	ENSG00000226483		ribosomal protein L7-like 1 (RPL7L1) pseudogene	-1.6667	0.6152
63122	ENSG00000217327	RPS7P5	ribosomal protein S7 pseudogene 5	-1.6667	0.1511
63121	ENSG00000201633		Y RNA	-1.6667	0.0388
63120	ENSG00000174255	ZNF80	zinc finger protein 80	-1.6667	0.6152
63119	ENSG00000168116	KIAA1586	KIAA1586	-1.6667	0.6152

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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