Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481532

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481532 Profile download	7010000000000000000000-770	Sequence Read Archive	SRP074598	SRP074598_M5	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	2-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000204025	TRPC5OS	TRPC5 opposite strand	2.5850	0.0000
2	ENSG00000278587		NA	2.5850	0.0000
3	ENSG00000234891		novel transcript	2.3219	0.0000
4	ENSG00000250475		ribosomal protein L6 (RPL6) pseudogene	2.3219	0.0000
5	ENSG00000200248	RNA5SP214	RNA, 5S ribosomal pseudogene 214	2.2925	0.0000
6	ENSG00000237314	RPL12P39	ribosomal protein L12 pseudogene 39	2.2925	0.0000
7	ENSG00000228120		novel transcript	2.1610	0.0000
8	ENSG00000248530	BCL2L12P1	BCL2 like 12 pseudogene 1	2.1610	0.0000
9	ENSG00000253493		interferon induced transmembrane protein 3 (1-8U) (IFITM3) pseudogene	2.1610	0.0000
10	ENSG00000216359		glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase) (GCNT1) pseudogene	2.1016	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000185668	POU3F1	POU class 3 homeobox 1	-1.6214	0.0000
63127	ENSG00000120055	C10orf95	chromosome 10 open reading frame 95	-1.6210	0.0000
63126	ENSG00000167193	CRK	CRK proto-oncogene, adaptor protein	-1.6209	0.0000
63125	ENSG00000187994	RINL	Ras and Rab interactor like	-1.6208	0.0000
63124	ENSG00000152078	TLCD4	TLC domain containing 4	-1.6206	0.0000
63123	ENSG00000227741		novel transcript	-1.6204	0.0186
63122	ENSG00000204624	DISP3	dispatched RND transporter family member 3	-1.6203	0.0000
63121	ENSG00000263800	MIR5684	microRNA 5684	-1.6192	0.0000
63120	ENSG00000280186		TEC	-1.6187	0.0000
63119	ENSG00000207329		Y RNA	-1.6187	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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