SHOGoiN Cell Methylome: GSM2481532

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481532


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7010000000000000000000-770Sequence Read ArchiveSRP074598SRP074598_M5Single-cell DNA methylome sequencing of human preimplantation embryosMethylome2-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204025 TRPC5OS TRPC5 opposite strand 2.5850 0.0000
2 ENSG00000278587 NA 2.5850 0.0000
3 ENSG00000234891 novel transcript 2.3219 0.0000
4 ENSG00000250475 ribosomal protein L6 (RPL6) pseudogene 2.3219 0.0000
5 ENSG00000200248 RNA5SP214 RNA, 5S ribosomal pseudogene 214 2.2925 0.0000
6 ENSG00000237314 RPL12P39 ribosomal protein L12 pseudogene 39 2.2925 0.0000
7 ENSG00000228120 novel transcript 2.1610 0.0000
8 ENSG00000248530 BCL2L12P1 BCL2 like 12 pseudogene 1 2.1610 0.0000
9 ENSG00000253493 interferon induced transmembrane protein 3 (1-8U) (IFITM3) pseudogene 2.1610 0.0000
10 ENSG00000216359 glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase) (GCNT1) pseudogene 2.1016 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000274814 family with sequence similarity 208, member A (FAM208A) pseudogene -1.6895 0.1060
63340 ENSG00000263697 MIR3621 microRNA 3621 -1.6895 0.0000
63339 ENSG00000276998 REXO1L2P REXO1 like 2, pseudogene -1.6886 0.0585
63338 ENSG00000252014 NA -1.6884 0.0000
63337 ENSG00000249416 ribosomal protein L10-like (RPL10L) pseudogene -1.6884 0.0000
63336 ENSG00000258516 novel transcript -1.6883 0.7630
63335 ENSG00000151458 ANKRD50 ankyrin repeat domain 50 -1.6880 0.0001
63334 ENSG00000252532 RNU7-193P RNA, U7 small nuclear 193 pseudogene -1.6872 0.0096
63333 ENSG00000142634 EFHD2 EF-hand domain family member D2 -1.6872 0.0000
63332 ENSG00000182983 ZNF662 zinc finger protein 662 -1.6871 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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