Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481532

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481532


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7010000000000000000000-770Sequence Read ArchiveSRP074598SRP074598_M5Single-cell DNA methylome sequencing of human preimplantation embryosMethylome2-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204025 TRPC5OS TRPC5 opposite strand 2.5850 0.0000
2 ENSG00000278587 NA 2.5850 0.0000
3 ENSG00000234891 novel transcript 2.3219 0.0000
4 ENSG00000250475 ribosomal protein L6 (RPL6) pseudogene 2.3219 0.0000
5 ENSG00000200248 RNA5SP214 RNA, 5S ribosomal pseudogene 214 2.2925 0.0000
6 ENSG00000237314 RPL12P39 ribosomal protein L12 pseudogene 39 2.2925 0.0000
7 ENSG00000228120 novel transcript 2.1610 0.0000
8 ENSG00000248530 BCL2L12P1 BCL2 like 12 pseudogene 1 2.1610 0.0000
9 ENSG00000253493 interferon induced transmembrane protein 3 (1-8U) (IFITM3) pseudogene 2.1610 0.0000
10 ENSG00000216359 glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase) (GCNT1) pseudogene 2.1016 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000185668 POU3F1 POU class 3 homeobox 1 -1.6214 0.0000
63127 ENSG00000120055 C10orf95 chromosome 10 open reading frame 95 -1.6210 0.0000
63126 ENSG00000167193 CRK CRK proto-oncogene, adaptor protein -1.6209 0.0000
63125 ENSG00000187994 RINL Ras and Rab interactor like -1.6208 0.0000
63124 ENSG00000152078 TLCD4 TLC domain containing 4 -1.6206 0.0000
63123 ENSG00000227741 novel transcript -1.6204 0.0186
63122 ENSG00000204624 DISP3 dispatched RND transporter family member 3 -1.6203 0.0000
63121 ENSG00000263800 MIR5684 microRNA 5684 -1.6192 0.0000
63120 ENSG00000280186 TEC -1.6187 0.0000
63119 ENSG00000207329 Y RNA -1.6187 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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