Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2481532
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481532
Profile download
7010000000000000000000-770
Sequence Read Archive
SRP074598
SRP074598_M5
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
2-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000204025
TRPC5OS
TRPC5 opposite strand
2.5850
0.0000
2
ENSG00000278587
NA
2.5850
0.0000
3
ENSG00000234891
novel transcript
2.3219
0.0000
4
ENSG00000250475
ribosomal protein L6 (RPL6) pseudogene
2.3219
0.0000
5
ENSG00000200248
RNA5SP214
RNA, 5S ribosomal pseudogene 214
2.2925
0.0000
6
ENSG00000237314
RPL12P39
ribosomal protein L12 pseudogene 39
2.2925
0.0000
7
ENSG00000228120
novel transcript
2.1610
0.0000
8
ENSG00000248530
BCL2L12P1
BCL2 like 12 pseudogene 1
2.1610
0.0000
9
ENSG00000253493
interferon induced transmembrane protein 3 (1-8U) (IFITM3) pseudogene
2.1610
0.0000
10
ENSG00000216359
glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase) (GCNT1) pseudogene
2.1016
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000185668
POU3F1
POU class 3 homeobox 1
-1.6214
0.0000
63127
ENSG00000120055
C10orf95
chromosome 10 open reading frame 95
-1.6210
0.0000
63126
ENSG00000167193
CRK
CRK proto-oncogene, adaptor protein
-1.6209
0.0000
63125
ENSG00000187994
RINL
Ras and Rab interactor like
-1.6208
0.0000
63124
ENSG00000152078
TLCD4
TLC domain containing 4
-1.6206
0.0000
63123
ENSG00000227741
novel transcript
-1.6204
0.0186
63122
ENSG00000204624
DISP3
dispatched RND transporter family member 3
-1.6203
0.0000
63121
ENSG00000263800
MIR5684
microRNA 5684
-1.6192
0.0000
63120
ENSG00000280186
TEC
-1.6187
0.0000
63119
ENSG00000207329
Y RNA
-1.6187
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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