SHOGoiN Cell Methylome: GSM2481532
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481532 Profile download | 7010000000000000000000-770 | Sequence Read Archive | SRP074598 | SRP074598_M5 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 2-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000204025 | TRPC5OS | TRPC5 opposite strand | 2.5850 | 0.0000 |
| 2 | ENSG00000278587 | NA | 2.5850 | 0.0000 | |
| 3 | ENSG00000234891 | novel transcript | 2.3219 | 0.0000 | |
| 4 | ENSG00000250475 | ribosomal protein L6 (RPL6) pseudogene | 2.3219 | 0.0000 | |
| 5 | ENSG00000200248 | RNA5SP214 | RNA, 5S ribosomal pseudogene 214 | 2.2925 | 0.0000 |
| 6 | ENSG00000237314 | RPL12P39 | ribosomal protein L12 pseudogene 39 | 2.2925 | 0.0000 |
| 7 | ENSG00000228120 | novel transcript | 2.1610 | 0.0000 | |
| 8 | ENSG00000248530 | BCL2L12P1 | BCL2 like 12 pseudogene 1 | 2.1610 | 0.0000 |
| 9 | ENSG00000253493 | interferon induced transmembrane protein 3 (1-8U) (IFITM3) pseudogene | 2.1610 | 0.0000 | |
| 10 | ENSG00000216359 | glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase) (GCNT1) pseudogene | 2.1016 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000274814 | family with sequence similarity 208, member A (FAM208A) pseudogene | -1.6895 | 0.1060 | |
| 63340 | ENSG00000263697 | MIR3621 | microRNA 3621 | -1.6895 | 0.0000 |
| 63339 | ENSG00000276998 | REXO1L2P | REXO1 like 2, pseudogene | -1.6886 | 0.0585 |
| 63338 | ENSG00000252014 | NA | -1.6884 | 0.0000 | |
| 63337 | ENSG00000249416 | ribosomal protein L10-like (RPL10L) pseudogene | -1.6884 | 0.0000 | |
| 63336 | ENSG00000258516 | novel transcript | -1.6883 | 0.7630 | |
| 63335 | ENSG00000151458 | ANKRD50 | ankyrin repeat domain 50 | -1.6880 | 0.0001 |
| 63334 | ENSG00000252532 | RNU7-193P | RNA, U7 small nuclear 193 pseudogene | -1.6872 | 0.0096 |
| 63333 | ENSG00000142634 | EFHD2 | EF-hand domain family member D2 | -1.6872 | 0.0000 |
| 63332 | ENSG00000182983 | ZNF662 | zinc finger protein 662 | -1.6871 | 0.0000 |
