Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481533

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481533


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7010000000000000000000-770Sequence Read ArchiveSRP074598SRP074598_M6Single-cell DNA methylome sequencing of human preimplantation embryosMethylome2-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000279011 tec 3.4594 0.0000
2 ENSG00000253190 novel transcript 3.1699 0.0000
3 ENSG00000207394 RNU6-1060P RNA, U6 small nuclear 1060, pseudogene 3.0000 0.0000
4 ENSG00000237135 DDX10P1 DEAD-box helicase 10 pseudogene 1 3.0000 0.0000
5 ENSG00000239035 SNORD13D small nucleolar RNA, C/D box 13D 3.0000 0.0000
6 ENSG00000263666 SNORA70D small nucleolar RNA, H/ACA box 70D 3.0000 0.0000
7 ENSG00000234766 LINC01496 long intergenic non-protein coding RNA 1496 2.9037 0.0000
8 ENSG00000133136 GNG5P2 G protein subunit gamma 5 pseudogene 2 2.8074 0.0000
9 ENSG00000163563 MNDA myeloid cell nuclear differentiation antigen 2.8074 0.0000
10 ENSG00000201033 RNU1-96P RNA, U1 small nuclear 96, pseudogene 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000251919 RNU7-105P RNA, U7 small nuclear 105 pseudogene -2.0375 0.0199
63127 ENSG00000241269 novel transcript -2.0369 0.0053
63126 ENSG00000188365 novel transcript -2.0369 0.0053
63125 ENSG00000234265 LINC01723 long intergenic non-protein coding RNA 1723 -2.0368 0.7204
63124 ENSG00000235139 novel transcript -2.0347 1.0000
63123 ENSG00000272729 novel transcript, antisense to HOXD3 -2.0344 0.0000
63122 ENSG00000254726 MEX3A mex-3 RNA binding family member A -2.0328 0.0000
63121 ENSG00000201354 Y RNA -2.0328 0.1051
63120 ENSG00000227640 SOX21-AS1 SOX21 antisense divergent transcript 1 -2.0327 0.0000
63119 ENSG00000125285 SOX21 SRY-box transcription factor 21 -2.0327 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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