SHOGoiN Cell Methylome: GSM2481533

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481533


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7010000000000000000000-770Sequence Read ArchiveSRP074598SRP074598_M6Single-cell DNA methylome sequencing of human preimplantation embryosMethylome2-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000279011 tec 3.4594 0.0000
2 ENSG00000253190 novel transcript 3.1699 0.0000
3 ENSG00000207394 RNU6-1060P RNA, U6 small nuclear 1060, pseudogene 3.0000 0.0000
4 ENSG00000237135 DDX10P1 DEAD-box helicase 10 pseudogene 1 3.0000 0.0000
5 ENSG00000239035 SNORD13D small nucleolar RNA, C/D box 13D 3.0000 0.0000
6 ENSG00000263666 SNORA70D small nucleolar RNA, H/ACA box 70D 3.0000 0.0000
7 ENSG00000234766 LINC01496 long intergenic non-protein coding RNA 1496 2.9037 0.0000
8 ENSG00000133136 GNG5P2 G protein subunit gamma 5 pseudogene 2 2.8074 0.0000
9 ENSG00000163563 MNDA myeloid cell nuclear differentiation antigen 2.8074 0.0000
10 ENSG00000201033 RNU1-96P RNA, U1 small nuclear 96, pseudogene 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000129911 KLF16 Kruppel like factor 16 -2.1767 0.0009
63340 ENSG00000157764 BRAF B-Raf proto-oncogene, serine/threonine kinase -2.1751 0.0000
63339 ENSG00000125398 SOX9 SRY-box 9 -2.1750 0.0705
63338 ENSG00000214725 CDIPTOSP CDIP transferase opposite strand, pseudogene -2.1745 0.4098
63337 ENSG00000253067 NA -2.1740 0.0066
63336 ENSG00000276406 novel transcript -2.1727 0.0581
63335 ENSG00000213669 ribosomal protein L21 (RPL21) pseudogene -2.1721 0.0020
63334 ENSG00000279491 TEC -2.1705 0.0004
63333 ENSG00000277986 NA -2.1703 0.0000
63332 ENSG00000238260 novel transcript -2.1655 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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