Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2481534
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481534
Profile download
7010000000000000000000-770
Sequence Read Archive
SRP074598
SRP074598_M7
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
2-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000130234
ACE2
angiotensin I converting enzyme 2
2.5850
0.0002
2
ENSG00000225833
uncharacterized LOC104798195
2.5850
0.0002
3
ENSG00000229568
SMC4P1
structural maintenance of chromosomes 4 pseudogene 1
2.5850
0.0002
4
ENSG00000233716
MTFR2P1
MTFR2 pseudogene 1
2.5850
0.0002
5
ENSG00000207967
MIR620
microRNA 620
2.3219
0.0000
6
ENSG00000222054
RNA5SP177
RNA, 5S ribosomal pseudogene 177
2.3219
0.0000
7
ENSG00000231767
RPS27AP5
ribosomal protein S27a pseudogene 5
2.3219
0.0010
8
ENSG00000232273
FTH1P1
ferritin heavy chain 1 pseudogene 1
2.3219
0.0000
9
ENSG00000240759
RPS27P21
ribosomal protein S27 pseudogene 21
2.3219
0.0000
10
ENSG00000253121
novel transcript
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000243844
RPL17P33
ribosomal protein L17 pseudogene 33
-1.5850
1.0000
63172
ENSG00000243238
IGKV2-30
immunoglobulin kappa variable 2-30
-1.5850
0.2262
63171
ENSG00000243081
novel transcript
-1.5850
0.5992
63170
ENSG00000242968
sulfotransferase family, cytosolic, 1C, member 4 (SULT1C4) pseudogene
-1.5850
1.0000
63169
ENSG00000242889
RN7SL449P
RNA, 7SL, cytoplasmic 449, pseudogene
-1.5850
1.0000
63168
ENSG00000242638
RN7SL294P
RNA, 7SL, cytoplasmic 294, pseudogene
-1.5850
1.0000
63167
ENSG00000242308
pseudogene similar to methionine adenosyltransferase II, alpha (MAT2A)
-1.5850
1.0000
63166
ENSG00000242280
SLC16A1P1
SLC16A1 pseudogene 1
-1.5850
0.1515
63165
ENSG00000242267
SKINT1L
Skint1 like (pseudogene)
-1.5850
1.0000
63164
ENSG00000242261
aurora kinase A (AURKA) pseudogene
-1.5850
0.1515
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...