Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481534

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481534 Profile download	7010000000000000000000-770	Sequence Read Archive	SRP074598	SRP074598_M7	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	2-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000130234	ACE2	angiotensin I converting enzyme 2	2.5850	0.0002
2	ENSG00000225833		novel transcript	2.5850	0.0002
3	ENSG00000229568	SMC4P1	structural maintenance of chromosomes 4 pseudogene 1	2.5850	0.0002
4	ENSG00000233716		family with sequence similarity 54, member A (FAM54A) pseudogene	2.5850	0.0002
5	ENSG00000207967	MIR620	microRNA 620	2.3219	0.0000
6	ENSG00000222054	RNA5SP177	RNA, 5S ribosomal pseudogene 177	2.3219	0.0000
7	ENSG00000231767	RPS27AP5	ribosomal protein S27a pseudogene 5	2.3219	0.0010
8	ENSG00000232273	FTH1P1	ferritin heavy chain 1 pseudogene 1	2.3219	0.0000
9	ENSG00000240759	RPS27P21	ribosomal protein S27 pseudogene 21	2.3219	0.0000
10	ENSG00000253121		novel transcript	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63221	ENSG00000253591	KCNIP1-AS1	KCNIP1 antisense RNA 1	-1.5850	1.0000
63220	ENSG00000253376		novel transcript	-1.5850	1.0000
63219	ENSG00000253047		NA	-1.5850	1.0000
63218	ENSG00000253010	RN7SKP256	RN7SK pseudogene 256	-1.5850	1.0000
63217	ENSG00000252959	RNA5SP170	RNA, 5S ribosomal pseudogene 170	-1.5850	1.0000
63216	ENSG00000252951	RNA5SP165	RNA, 5S ribosomal pseudogene 165	-1.5850	1.0000
63215	ENSG00000252847	RNU2-46P	RNA, U2 small nuclear 46, pseudogene	-1.5850	0.5992
63214	ENSG00000252787		NA	-1.5850	0.0004
63213	ENSG00000252750	RNU7-70P	RNA, U7 small nuclear 70 pseudogene	-1.5850	1.0000
63212	ENSG00000252735	RNU6-528P	RNA, U6 small nuclear 528, pseudogene	-1.5850	0.1515

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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