Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481534

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481534


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7010000000000000000000-770Sequence Read ArchiveSRP074598SRP074598_M7Single-cell DNA methylome sequencing of human preimplantation embryosMethylome2-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000130234 ACE2 angiotensin I converting enzyme 2 2.5850 0.0002
2 ENSG00000225833 novel transcript 2.5850 0.0002
3 ENSG00000229568 SMC4P1 structural maintenance of chromosomes 4 pseudogene 1 2.5850 0.0002
4 ENSG00000233716 family with sequence similarity 54, member A (FAM54A) pseudogene 2.5850 0.0002
5 ENSG00000207967 MIR620 microRNA 620 2.3219 0.0000
6 ENSG00000222054 RNA5SP177 RNA, 5S ribosomal pseudogene 177 2.3219 0.0000
7 ENSG00000231767 RPS27AP5 ribosomal protein S27a pseudogene 5 2.3219 0.0010
8 ENSG00000232273 FTH1P1 ferritin heavy chain 1 pseudogene 1 2.3219 0.0000
9 ENSG00000240759 RPS27P21 ribosomal protein S27 pseudogene 21 2.3219 0.0000
10 ENSG00000253121 novel transcript 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000253591 KCNIP1-AS1 KCNIP1 antisense RNA 1 -1.5850 1.0000
63220 ENSG00000253376 novel transcript -1.5850 1.0000
63219 ENSG00000253047 NA -1.5850 1.0000
63218 ENSG00000253010 RN7SKP256 RN7SK pseudogene 256 -1.5850 1.0000
63217 ENSG00000252959 RNA5SP170 RNA, 5S ribosomal pseudogene 170 -1.5850 1.0000
63216 ENSG00000252951 RNA5SP165 RNA, 5S ribosomal pseudogene 165 -1.5850 1.0000
63215 ENSG00000252847 RNU2-46P RNA, U2 small nuclear 46, pseudogene -1.5850 0.5992
63214 ENSG00000252787 NA -1.5850 0.0004
63213 ENSG00000252750 RNU7-70P RNA, U7 small nuclear 70 pseudogene -1.5850 1.0000
63212 ENSG00000252735 RNU6-528P RNA, U6 small nuclear 528, pseudogene -1.5850 0.1515

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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