Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481534

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481534 Profile download	7010000000000000000000-770	Sequence Read Archive	SRP074598	SRP074598_M7	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	2-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000130234	ACE2	angiotensin I converting enzyme 2	2.5850	0.0002
2	ENSG00000225833		uncharacterized LOC104798195	2.5850	0.0002
3	ENSG00000229568	SMC4P1	structural maintenance of chromosomes 4 pseudogene 1	2.5850	0.0002
4	ENSG00000233716	MTFR2P1	MTFR2 pseudogene 1	2.5850	0.0002
5	ENSG00000207967	MIR620	microRNA 620	2.3219	0.0000
6	ENSG00000222054	RNA5SP177	RNA, 5S ribosomal pseudogene 177	2.3219	0.0000
7	ENSG00000231767	RPS27AP5	ribosomal protein S27a pseudogene 5	2.3219	0.0010
8	ENSG00000232273	FTH1P1	ferritin heavy chain 1 pseudogene 1	2.3219	0.0000
9	ENSG00000240759	RPS27P21	ribosomal protein S27 pseudogene 21	2.3219	0.0000
10	ENSG00000253121		novel transcript	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000243844	RPL17P33	ribosomal protein L17 pseudogene 33	-1.5850	1.0000
63172	ENSG00000243238	IGKV2-30	immunoglobulin kappa variable 2-30	-1.5850	0.2262
63171	ENSG00000243081		novel transcript	-1.5850	0.5992
63170	ENSG00000242968		sulfotransferase family, cytosolic, 1C, member 4 (SULT1C4) pseudogene	-1.5850	1.0000
63169	ENSG00000242889	RN7SL449P	RNA, 7SL, cytoplasmic 449, pseudogene	-1.5850	1.0000
63168	ENSG00000242638	RN7SL294P	RNA, 7SL, cytoplasmic 294, pseudogene	-1.5850	1.0000
63167	ENSG00000242308		pseudogene similar to methionine adenosyltransferase II, alpha (MAT2A)	-1.5850	1.0000
63166	ENSG00000242280	SLC16A1P1	SLC16A1 pseudogene 1	-1.5850	0.1515
63165	ENSG00000242267	SKINT1L	Skint1 like (pseudogene)	-1.5850	1.0000
63164	ENSG00000242261		aurora kinase A (AURKA) pseudogene	-1.5850	0.1515

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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