SHOGoiN Cell Methylome: GSM2481534
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481534 Profile download | 7010000000000000000000-770 | Sequence Read Archive | SRP074598 | SRP074598_M7 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 2-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000130234 | ACE2 | angiotensin I converting enzyme 2 | 2.5850 | 0.0002 |
| 2 | ENSG00000225833 | novel transcript | 2.5850 | 0.0002 | |
| 3 | ENSG00000229568 | SMC4P1 | structural maintenance of chromosomes 4 pseudogene 1 | 2.5850 | 0.0002 |
| 4 | ENSG00000233716 | family with sequence similarity 54, member A (FAM54A) pseudogene | 2.5850 | 0.0002 | |
| 5 | ENSG00000207967 | MIR620 | microRNA 620 | 2.3219 | 0.0000 |
| 6 | ENSG00000222054 | RNA5SP177 | RNA, 5S ribosomal pseudogene 177 | 2.3219 | 0.0000 |
| 7 | ENSG00000231767 | novel protein similar to ribosomal protein S27a RPS27A | 2.3219 | 0.0010 | |
| 8 | ENSG00000232273 | FTH1P1 | ferritin heavy chain 1 pseudogene 1 | 2.3219 | 0.0000 |
| 9 | ENSG00000240759 | RPS27P21 | ribosomal protein S27 pseudogene 21 | 2.3219 | 0.0000 |
| 10 | ENSG00000253121 | novel transcript | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000279747 | TEC | -1.5850 | 1.0000 | |
| 63340 | ENSG00000279534 | TEC | -1.5850 | 1.0000 | |
| 63339 | ENSG00000279116 | OR8D2 | olfactory receptor family 8 subfamily D member 2 (gene/pseudogene) | -1.5850 | 1.0000 |
| 63338 | ENSG00000278908 | TEC | -1.5850 | 1.0000 | |
| 63337 | ENSG00000278650 | adenosine deaminase domain containing 1 (testis-specific) (ADAD1) pseudogene | -1.5850 | 1.0000 | |
| 63336 | ENSG00000278630 | LINC02335 | long intergenic non-protein coding RNA 2335 | -1.5850 | 1.0000 |
| 63335 | ENSG00000278552 | abhydrolase domain containing 17A (ABHD17A) pseudogene | -1.5850 | 0.2262 | |
| 63334 | ENSG00000278497 | RN7SL759P | RNA, 7SL, cytoplasmic 759, pseudogene | -1.5850 | 0.5992 |
| 63333 | ENSG00000278319 | family with sequence similarity 156, member A (FAM156A) pseudogene | -1.5850 | 0.3652 | |
| 63332 | ENSG00000278077 | zinc finger protein 829 (ZNF829) pseudogene | -1.5850 | 1.0000 |
