SHOGoiN Cell Methylome: GSM2481535

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481535


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7010000000000000000000-770Sequence Read ArchiveSRP074598SRP074598_M8Single-cell DNA methylome sequencing of human preimplantation embryosMethylome2-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253452 novel transcript 3.0000 0.0000
2 ENSG00000235277 novel transcript 2.8074 0.0000
3 ENSG00000224697 NEFMP1 neurofilament medium pseudogene 1 2.5850 0.0000
4 ENSG00000230823 CBX1P1 chromobox 1 pseudogene 1 2.5850 0.0000
5 ENSG00000252470 RNU6-551P RNA, U6 small nuclear 551, pseudogene 2.5850 0.0000
6 ENSG00000259892 amyloid beta (A4) precursor protein-binding, family A, member 2 (APBA2) pseudogene 2.4340 0.0000
7 ENSG00000172289 OR10V1 olfactory receptor family 10 subfamily V member 1 2.3219 0.0001
8 ENSG00000200789 RNU1-65P RNA, U1 small nuclear 65, pseudogene 2.3219 0.0001
9 ENSG00000204702 OR2J1 olfactory receptor family 2 subfamily J member 1 (gene/pseudogene) 2.3219 0.0000
10 ENSG00000231824 AKAIN1 A-kinase anchor inhibitor 1 2.3219 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000105829 BET1 Bet1 golgi vesicular membrane trafficking protein -1.7900 0.0089
63340 ENSG00000135722 FBXL8 F-box and leucine rich repeat protein 8 -1.7897 0.0000
63339 ENSG00000261915 novel protein -1.7895 0.0000
63338 ENSG00000187003 ACTL7A actin like 7A -1.7892 0.0000
63337 ENSG00000166770 ZNF667-AS1 ZNF667 antisense RNA 1 (head to head) -1.7885 0.0000
63335 ENSG00000047365 ARAP2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 -1.7859 0.0093
63334 ENSG00000138439 FAM117B family with sequence similarity 117 member B -1.7857 0.0000
63333 ENSG00000179796 LRRC3B leucine rich repeat containing 3B -1.7854 0.0000
63332 ENSG00000197322 C17orf102 chromosome 17 open reading frame 102 -1.7845 0.0000
10 ENSG00000231824 AKAIN1 A-kinase anchor inhibitor 1 2.3219 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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