Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481535

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481535


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7010000000000000000000-770Sequence Read ArchiveSRP074598SRP074598_M8Single-cell DNA methylome sequencing of human preimplantation embryosMethylome2-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253452 novel transcript 3.0000 0.0000
2 ENSG00000235277 novel transcript 2.8074 0.0000
3 ENSG00000224697 NEFMP1 neurofilament medium pseudogene 1 2.5850 0.0000
4 ENSG00000230823 CBX1P1 chromobox 1 pseudogene 1 2.5850 0.0000
5 ENSG00000252470 RNU6-551P RNA, U6 small nuclear 551, pseudogene 2.5850 0.0000
6 ENSG00000259892 amyloid beta (A4) precursor protein-binding, family A, member 2 (APBA2) pseudogene 2.4340 0.0000
7 ENSG00000172289 OR10V1 olfactory receptor family 10 subfamily V member 1 2.3219 0.0001
8 ENSG00000200789 RNU1-65P RNA, U1 small nuclear 65, pseudogene 2.3219 0.0001
9 ENSG00000204702 OR2J1 olfactory receptor family 2 subfamily J member 1 2.3219 0.0000
10 ENSG00000231824 AKAIN1 A-kinase anchor inhibitor 1 2.3219 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000180592 SKIDA1 SKI/DACH domain containing 1 -1.7178 0.0000
63127 ENSG00000276722 NA -1.7174 0.0000
63126 ENSG00000123983 ACSL3 acyl-CoA synthetase long chain family member 3 -1.7171 0.0000
63125 ENSG00000230935 RPS3P1 ribosomal protein S3 pseudogene 1 -1.7170 0.0087
63124 ENSG00000283255 novel transcript -1.7170 0.6292
63123 ENSG00000233480 LINC01683 long intergenic non-protein coding RNA 1683 -1.7170 0.0288
63122 ENSG00000228767 KRT8P18 keratin 8 pseudogene 18 -1.7169 0.0004
63121 ENSG00000269054 ZNF497-AS1 ZNF497 antisense RNA 1 -1.7166 0.0000
63119 ENSG00000154265 ABCA5 ATP binding cassette subfamily A member 5 -1.7163 0.0000
10 ENSG00000231824 AKAIN1 A-kinase anchor inhibitor 1 2.3219 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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