SHOGoiN Cell Methylome: GSM2481536
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481536 Profile download | 7010000000000000000000-771 | Sequence Read Archive | SRP074598 | SRP074598_M9 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 4-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000260534 | novel transcript | 4.1627 | 0.0000 | |
| 2 | ENSG00000283798 | MIR630 | microRNA 630 | 4.1627 | 0.0000 |
| 3 | ENSG00000173597 | SULT1B1 | sulfotransferase family 1B member 1 | 2.8074 | 0.0000 |
| 4 | ENSG00000272155 | novel transcript, antisense to MTFR1 | 2.8074 | 0.0000 | |
| 6 | ENSG00000226541 | ribosomal protein L36 (RPL36) pseudogene | 2.5850 | 0.0000 | |
| 7 | ENSG00000240721 | RPS4XP15 | ribosomal protein S4X pseudogene 15 | 2.5850 | 0.0000 |
| 8 | ENSG00000243806 | RPL7P18 | ribosomal protein L7 pseudogene 18 | 2.5850 | 0.0000 |
| 9 | ENSG00000251839 | RNU7-12P | RNA, U7 small nuclear 12 pseudogene | 2.5850 | 0.0000 |
| 10 | ENSG00000261630 | novel transcript, antisense to FTO | 2.5850 | 0.0000 | |
| 63332 | ENSG00000276631 | novel transcript | -2.1421 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000206190 | ATP10A | ATPase phospholipid transporting 10A (putative) | -2.1466 | 0.0000 |
| 63340 | ENSG00000261274 | TP53TG3GP | TP53 target 3 family member G, pseudogene | -2.1464 | 0.0346 |
| 63339 | ENSG00000204873 | KRTAP9-3 | keratin associated protein 9-3 | -2.1462 | 0.6273 |
| 63338 | ENSG00000196428 | TSC22D2 | TSC22 domain family member 2 | -2.1455 | 0.0000 |
| 63337 | ENSG00000176054 | RPL23P2 | ribosomal protein L23 pseudogene 2 | -2.1454 | 0.0004 |
| 63336 | ENSG00000196352 | CD55 | CD55 molecule (Cromer blood group) | -2.1448 | 0.0000 |
| 63335 | ENSG00000173227 | SYT12 | synaptotagmin 12 | -2.1429 | 0.0000 |
| 63334 | ENSG00000174606 | ANGEL2 | angel homolog 2 | -2.1428 | 0.1223 |
| 63333 | ENSG00000215906 | LACTBL1 | lactamase beta like 1 | -2.1423 | 0.0000 |
| 63332 | ENSG00000276631 | novel transcript | -2.1421 | 0.0000 |
