Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2481536
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481536
Profile download
7010000000000000000000-771
Sequence Read Archive
SRP074598
SRP074598_M9
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
4-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000260534
novel transcript
4.1627
0.0000
2
ENSG00000283798
MIR630
microRNA 630
4.1627
0.0000
3
ENSG00000173597
SULT1B1
sulfotransferase family 1B member 1
2.8074
0.0000
4
ENSG00000272155
novel transcript, antisense to MTFR1
2.8074
0.0000
6
ENSG00000226541
ribosomal protein L36 (RPL36) pseudogene
2.5850
0.0000
7
ENSG00000240721
RPS4XP15
ribosomal protein S4X pseudogene 15
2.5850
0.0000
8
ENSG00000243806
RPL7P18
ribosomal protein L7 pseudogene 18
2.5850
0.0000
9
ENSG00000251839
RNU7-12P
RNA, U7 small nuclear 12 pseudogene
2.5850
0.0000
10
ENSG00000261630
novel transcript, antisense to FTO
2.5850
0.0000
63119
ENSG00000091651
ORC6
origin recognition complex subunit 6
-2.0556
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000264419
MIR548AC
microRNA 548ac
-2.0575
0.6273
63127
ENSG00000244122
UGT1A7
UDP glucuronosyltransferase family 1 member A7
-2.0575
0.6273
63126
ENSG00000236046
novel transcript
-2.0575
0.6273
63125
ENSG00000214743
MRPS5P3
mitochondrial ribosomal protein S5 pseudogene 3
-2.0572
0.6229
63124
ENSG00000137841
PLCB2
phospholipase C beta 2
-2.0571
0.0000
63123
ENSG00000233306
TRGV2
T cell receptor gamma variable 2
-2.0571
0.1114
63122
ENSG00000260351
novel transcript, antisense to BTBD1
-2.0566
1.0000
63121
ENSG00000201464
Y RNA
-2.0566
1.0000
63120
ENSG00000282816
novel transcript, antisense to NEFH
-2.0565
0.0000
63119
ENSG00000091651
ORC6
origin recognition complex subunit 6
-2.0556
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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