Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481536

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481536


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M9Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000260534 novel transcript 4.1627 0.0000
2 ENSG00000283798 MIR630 microRNA 630 4.1627 0.0000
3 ENSG00000173597 SULT1B1 sulfotransferase family 1B member 1 2.8074 0.0000
4 ENSG00000272155 novel transcript, antisense to MTFR1 2.8074 0.0000
6 ENSG00000226541 ribosomal protein L36 (RPL36) pseudogene 2.5850 0.0000
7 ENSG00000240721 RPS4XP15 ribosomal protein S4X pseudogene 15 2.5850 0.0000
8 ENSG00000243806 RPL7P18 ribosomal protein L7 pseudogene 18 2.5850 0.0000
9 ENSG00000251839 RNU7-12P RNA, U7 small nuclear 12 pseudogene 2.5850 0.0000
10 ENSG00000261630 novel transcript, antisense to FTO 2.5850 0.0000
63119 ENSG00000091651 ORC6 origin recognition complex subunit 6 -2.0556 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000264419 MIR548AC microRNA 548ac -2.0575 0.6273
63127 ENSG00000244122 UGT1A7 UDP glucuronosyltransferase family 1 member A7 -2.0575 0.6273
63126 ENSG00000236046 novel transcript -2.0575 0.6273
63125 ENSG00000214743 MRPS5P3 mitochondrial ribosomal protein S5 pseudogene 3 -2.0572 0.6229
63124 ENSG00000137841 PLCB2 phospholipase C beta 2 -2.0571 0.0000
63123 ENSG00000233306 TRGV2 T cell receptor gamma variable 2 -2.0571 0.1114
63122 ENSG00000260351 novel transcript, antisense to BTBD1 -2.0566 1.0000
63121 ENSG00000201464 Y RNA -2.0566 1.0000
63120 ENSG00000282816 novel transcript, antisense to NEFH -2.0565 0.0000
63119 ENSG00000091651 ORC6 origin recognition complex subunit 6 -2.0556 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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