SHOGoiN Cell Methylome: GSM2481537

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481537


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M10Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000240902 APOOP2 apolipoprotein O pseudogene 2 2.8074 0.0000
2 ENSG00000258689 LINC01269 long intergenic non-protein coding RNA 1269 2.6356 0.0000
3 ENSG00000203408 OR6C71P olfactory receptor family 6 subfamily C member 71 pseudogene 2.5850 0.0000
4 ENSG00000227118 BTF3P13 basic transcription factor 3 pseudogene 13 2.5850 0.0000
5 ENSG00000112796 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 2.3219 0.0000
6 ENSG00000150782 IL18 interleukin 18 2.3219 0.0000
7 ENSG00000200389 RNU6-509P RNA, U6 small nuclear 509, pseudogene 2.3219 0.0000
8 ENSG00000218819 TDRD15 tudor domain containing 15 2.3219 0.0000
9 ENSG00000222649 NA 2.3219 0.0000
10 ENSG00000226318 RPS3AP38 ribosomal protein S3a pseudogene 38 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000229066 novel transcript -1.9359 0.0747
63340 ENSG00000096968 JAK2 Janus kinase 2 -1.9358 0.0000
63339 ENSG00000263482 ANTXRLP1 ANTXR like pseudogene 1 -1.9357 0.2938
63338 ENSG00000262921 novel transcript -1.9356 0.0004
63337 ENSG00000249504 PCDHA14 protocadherin alpha 14 pseudogene -1.9345 0.0001
63336 ENSG00000136099 PCDH8 protocadherin 8 -1.9344 0.0000
63335 ENSG00000264553 MIR4257 microRNA 4257 -1.9335 0.0000
63334 ENSG00000101132 PFDN4 prefoldin subunit 4 -1.9327 0.8209
63333 ENSG00000224372 HLA-N major histocompatibility complex, class I, N (pseudogene) -1.9322 0.7998
63332 ENSG00000246084 LINC02325 long intergenic non-protein coding RNA 2325 -1.9317 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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