Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481537

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481537


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M10Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000240902 APOOP2 apolipoprotein O pseudogene 2 2.8074 0.0000
2 ENSG00000258689 LINC01269 long intergenic non-protein coding RNA 1269 2.6356 0.0000
3 ENSG00000203408 OR6C71P olfactory receptor family 6 subfamily C member 71 pseudogene 2.5850 0.0000
4 ENSG00000227118 BTF3P13 basic transcription factor 3 pseudogene 13 2.5850 0.0000
5 ENSG00000112796 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 2.3219 0.0000
6 ENSG00000150782 IL18 interleukin 18 2.3219 0.0000
7 ENSG00000200389 RNU6-509P RNA, U6 small nuclear 509, pseudogene 2.3219 0.0000
8 ENSG00000218819 TDRD15 tudor domain containing 15 2.3219 0.0000
9 ENSG00000222649 Y RNA 2.3219 0.0000
10 ENSG00000226318 RPS3AP38 RPS3A pseudogene 38 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000260231 KDM7A-DT KDM7A divergent transcript -1.8555 0.0000
63127 ENSG00000006459 KDM7A lysine demethylase 7A -1.8555 0.0000
63126 ENSG00000204315 FKBPL FKBP prolyl isomerase like -1.8554 0.0490
63125 ENSG00000132554 RGS22 regulator of G protein signaling 22 -1.8554 0.0452
63124 ENSG00000203781 S100A7P1 S100 calcium binding protein A7 pseudogene 1 -1.8548 0.6304
63123 ENSG00000183072 NKX2-5 NK2 homeobox 5 -1.8539 0.0001
63122 ENSG00000255057 zinc finger protein 260 (ZNF260) pseudogene -1.8531 0.0000
63121 ENSG00000162997 PRORSD1P prolyl-tRNA synthetase associated domain containing 1, pseudogene -1.8528 0.0033
63120 ENSG00000275540 ubiquitin specific peptidase 6 (Tre-2 oncogene) (USP6) pseudogene -1.8528 0.0006
63119 ENSG00000163412 EIF4E3 eukaryotic translation initiation factor 4E family member 3 -1.8525 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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