Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481538

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481538


Profile download
7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M11Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254303 novel transcript 3.4594 0.0000
2 ENSG00000233125 ACTBP12 ACTB pseudogene 12 3.3284 0.0000
3 ENSG00000205293 LINC01602 long intergenic non-protein coding RNA 1602 3.1699 0.0000
4 ENSG00000227862 HNRNPA1P31 heterogeneous nuclear ribonucleoprotein A1 pseudogene 31 3.1699 0.0000
5 ENSG00000234187 AIMP1P1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 pseudogene 1 3.1699 0.0000
7 ENSG00000267734 novel transcript, antisense to HS2ST1 3.1699 0.0000
9 ENSG00000162630 B3GALT2 beta-1,3-galactosyltransferase 2 3.0000 0.0000
10 ENSG00000162753 SLC9C2 solute carrier family 9 member C2 (putative) 3.0000 0.0000
63119 ENSG00000152782 PANK1 pantothenate kinase 1 -2.3356 0.0003
63120 ENSG00000279565 TEC -2.3360 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000207569 MIR433 microRNA 433 -2.3387 0.0000
63127 ENSG00000143669 LYST lysosomal trafficking regulator -2.3380 0.0004
63126 ENSG00000142748 FCN3 ficolin 3 -2.3377 0.0000
63125 ENSG00000278708 NA -2.3376 0.0000
63124 ENSG00000277469 NA -2.3376 0.0000
63123 ENSG00000274740 NA -2.3370 0.0000
63122 ENSG00000165115 KIF27 kinesin family member 27 -2.3366 0.0344
63121 ENSG00000264743 DPRXP4 divergent-paired related homeobox pseudogene 4 -2.3365 0.4218
63120 ENSG00000279565 TEC -2.3360 0.0000
63119 ENSG00000152782 PANK1 pantothenate kinase 1 -2.3356 0.0003

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...