Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481539

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481539 Profile download	7010000000000000000000-771	Sequence Read Archive	SRP074598	SRP074598_M12	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	4-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000178660	ARMC10P1	armadillo repeat containing 10 pseudogene 1	3.8074	0.0000
2	ENSG00000239473	RPL7P38	ribosomal protein L7 pseudogene 38	2.8074	0.0000
3	ENSG00000241409		novel transcript	2.8074	0.0000
4	ENSG00000184227	ACOT1	acyl-CoA thioesterase 1	2.5850	0.0000
5	ENSG00000218189	POM121L14P	POM121 transmembrane nucleoporin like 14, pseudogene	2.5850	0.0000
6	ENSG00000253229	HIGD1AP6	HIG1 hypoxia inducible domain family member 1A pseudogene 6	2.5850	0.0000
7	ENSG00000265699	MIR548AE2	microRNA 548ae-2	2.5850	0.0000
8	ENSG00000256021	ELOCP31	elongin C pseudogene 31	2.4037	0.0000
9	ENSG00000226498	RPSAP21	ribosomal protein SA pseudogene 21	2.3350	0.0000
10	ENSG00000176268	CYCSP34	CYCS pseudogene 34	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000237828	PA2G4P1	proliferation-associated 2G4 pseudogene 1	-1.9183	0.0735
63127	ENSG00000261798		novel transcript, antisense to BMP8B	-1.9173	0.0000
63126	ENSG00000152315	KCNK13	potassium two pore domain channel subfamily K member 13	-1.9170	0.0000
63125	ENSG00000236377		novel transcript	-1.9170	0.6228
63124	ENSG00000222385	RN7SKP158	RN7SK pseudogene 158	-1.9170	0.6191
63123	ENSG00000197461	PDGFA	platelet derived growth factor subunit A	-1.9169	0.0000
63122	ENSG00000236875	DDX11L5	DEAD/H-box helicase 11 like 5 (pseudogene)	-1.9167	0.0000
63121	ENSG00000270209		zinc finger protein 280 pseudogene	-1.9163	0.1663
63120	ENSG00000130700	GATA5	GATA binding protein 5	-1.9163	0.0000
63119	ENSG00000259728	LINC00933	long intergenic non-protein coding RNA 933	-1.9162	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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