Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481539
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481539
Profile download
7010000000000000000000-771
Sequence Read Archive
SRP074598
SRP074598_M12
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
4-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000178660
ARMC10P1
armadillo repeat containing 10 pseudogene 1
3.8074
0.0000
2
ENSG00000239473
RPL7P38
ribosomal protein L7 pseudogene 38
2.8074
0.0000
3
ENSG00000241409
novel transcript
2.8074
0.0000
4
ENSG00000184227
ACOT1
acyl-CoA thioesterase 1
2.5850
0.0000
5
ENSG00000218189
POM121L14P
POM121 transmembrane nucleoporin like 14, pseudogene
2.5850
0.0000
6
ENSG00000253229
HIGD1AP6
HIG1 hypoxia inducible domain family member 1A pseudogene 6
2.5850
0.0000
7
ENSG00000265699
MIR548AE2
microRNA 548ae-2
2.5850
0.0000
8
ENSG00000256021
ELOCP31
elongin C pseudogene 31
2.4037
0.0000
9
ENSG00000226498
RPSAP21
ribosomal protein SA pseudogene 21
2.3350
0.0000
10
ENSG00000176268
CYCSP34
CYCS pseudogene 34
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000237828
PA2G4P1
proliferation-associated 2G4 pseudogene 1
-1.9183
0.0735
63127
ENSG00000261798
novel transcript, antisense to BMP8B
-1.9173
0.0000
63126
ENSG00000152315
KCNK13
potassium two pore domain channel subfamily K member 13
-1.9170
0.0000
63125
ENSG00000236377
novel transcript
-1.9170
0.6228
63124
ENSG00000222385
RN7SKP158
RN7SK pseudogene 158
-1.9170
0.6191
63123
ENSG00000197461
PDGFA
platelet derived growth factor subunit A
-1.9169
0.0000
63122
ENSG00000236875
DDX11L5
DEAD/H-box helicase 11 like 5 (pseudogene)
-1.9167
0.0000
63121
ENSG00000270209
zinc finger protein 280 pseudogene
-1.9163
0.1663
63120
ENSG00000130700
GATA5
GATA binding protein 5
-1.9163
0.0000
63119
ENSG00000259728
LINC00933
long intergenic non-protein coding RNA 933
-1.9162
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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