SHOGoiN Cell Methylome: GSM2481539

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481539


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M12Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000178660 ARMC10P1 armadillo repeat containing 10 pseudogene 1 3.8074 0.0000
2 ENSG00000239473 RPL7P38 ribosomal protein L7 pseudogene 38 2.8074 0.0000
3 ENSG00000241409 novel transcript 2.8074 0.0000
4 ENSG00000184227 ACOT1 acyl-CoA thioesterase 1 2.5850 0.0000
5 ENSG00000218189 POM121L14P POM121 transmembrane nucleoporin like 14, pseudogene 2.5850 0.0000
6 ENSG00000253229 HIGD1AP6 HIG1 hypoxia inducible domain family member 1A pseudogene 6 2.5850 0.0000
7 ENSG00000265699 MIR548AE2 microRNA 548ae-2 2.5850 0.0000
8 ENSG00000256021 ELOCP31 elongin C pseudogene 31 2.4037 0.0000
9 ENSG00000226498 RPSAP21 ribosomal protein SA pseudogene 21 2.3350 0.0000
10 ENSG00000176268 CYCSP34 CYCS pseudogene 34 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000207931 MIR577 microRNA 577 -2.0000 1.0000
63340 ENSG00000207716 MIR572 microRNA 572 -2.0000 1.0000
63339 ENSG00000207394 RNU6-1060P RNA, U6 small nuclear 1060, pseudogene -2.0000 1.0000
63338 ENSG00000203859 HSD3B2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 -2.0000 1.0000
63337 ENSG00000203825 phosphodiesterase 4D interacting protein (myomegalin) (PDE4DIP) pseudogene -2.0000 1.0000
63336 ENSG00000201648 RNU4-91P RNA, U4 small nuclear 91, pseudogene -2.0000 1.0000
63335 ENSG00000201133 NA -2.0000 1.0000
63334 ENSG00000199643 RNU4-90P RNA, U4 small nuclear 90, pseudogene -2.0000 0.6228
63333 ENSG00000199530 NA -2.0000 1.0000
63332 ENSG00000198157 HMGN5 high mobility group nucleosome binding domain 5 -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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