Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481539

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481539


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M12Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000178660 ARMC10P1 armadillo repeat containing 10 pseudogene 1 3.8074 0.0000
2 ENSG00000239473 RPL7P38 ribosomal protein L7 pseudogene 38 2.8074 0.0000
3 ENSG00000241409 novel transcript 2.8074 0.0000
4 ENSG00000184227 ACOT1 acyl-CoA thioesterase 1 2.5850 0.0000
5 ENSG00000218189 POM121L14P POM121 transmembrane nucleoporin like 14, pseudogene 2.5850 0.0000
6 ENSG00000253229 HIGD1AP6 HIG1 hypoxia inducible domain family member 1A pseudogene 6 2.5850 0.0000
7 ENSG00000265699 MIR548AE2 microRNA 548ae-2 2.5850 0.0000
8 ENSG00000256021 ELOCP31 elongin C pseudogene 31 2.4037 0.0000
9 ENSG00000226498 RPSAP21 ribosomal protein SA pseudogene 21 2.3350 0.0000
10 ENSG00000176268 CYCSP34 CYCS pseudogene 34 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000237828 PA2G4P1 proliferation-associated 2G4 pseudogene 1 -1.9183 0.0735
63127 ENSG00000261798 novel transcript, antisense to BMP8B -1.9173 0.0000
63126 ENSG00000152315 KCNK13 potassium two pore domain channel subfamily K member 13 -1.9170 0.0000
63125 ENSG00000236377 novel transcript -1.9170 0.6228
63124 ENSG00000222385 RN7SKP158 RN7SK pseudogene 158 -1.9170 0.6191
63123 ENSG00000197461 PDGFA platelet derived growth factor subunit A -1.9169 0.0000
63122 ENSG00000236875 DDX11L5 DEAD/H-box helicase 11 like 5 (pseudogene) -1.9167 0.0000
63121 ENSG00000270209 zinc finger protein 280 pseudogene -1.9163 0.1663
63120 ENSG00000130700 GATA5 GATA binding protein 5 -1.9163 0.0000
63119 ENSG00000259728 LINC00933 long intergenic non-protein coding RNA 933 -1.9162 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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