SHOGoiN Cell Methylome: GSM2481539
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481539 Profile download | 7010000000000000000000-771 | Sequence Read Archive | SRP074598 | SRP074598_M12 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 4-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000178660 | ARMC10P1 | armadillo repeat containing 10 pseudogene 1 | 3.8074 | 0.0000 |
| 2 | ENSG00000239473 | RPL7P38 | ribosomal protein L7 pseudogene 38 | 2.8074 | 0.0000 |
| 3 | ENSG00000241409 | novel transcript | 2.8074 | 0.0000 | |
| 4 | ENSG00000184227 | ACOT1 | acyl-CoA thioesterase 1 | 2.5850 | 0.0000 |
| 5 | ENSG00000218189 | POM121L14P | POM121 transmembrane nucleoporin like 14, pseudogene | 2.5850 | 0.0000 |
| 6 | ENSG00000253229 | HIGD1AP6 | HIG1 hypoxia inducible domain family member 1A pseudogene 6 | 2.5850 | 0.0000 |
| 7 | ENSG00000265699 | MIR548AE2 | microRNA 548ae-2 | 2.5850 | 0.0000 |
| 8 | ENSG00000256021 | ELOCP31 | elongin C pseudogene 31 | 2.4037 | 0.0000 |
| 9 | ENSG00000226498 | RPSAP21 | ribosomal protein SA pseudogene 21 | 2.3350 | 0.0000 |
| 10 | ENSG00000176268 | CYCSP34 | CYCS pseudogene 34 | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000207931 | MIR577 | microRNA 577 | -2.0000 | 1.0000 |
| 63340 | ENSG00000207716 | MIR572 | microRNA 572 | -2.0000 | 1.0000 |
| 63339 | ENSG00000207394 | RNU6-1060P | RNA, U6 small nuclear 1060, pseudogene | -2.0000 | 1.0000 |
| 63338 | ENSG00000203859 | HSD3B2 | hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 | -2.0000 | 1.0000 |
| 63337 | ENSG00000203825 | phosphodiesterase 4D interacting protein (myomegalin) (PDE4DIP) pseudogene | -2.0000 | 1.0000 | |
| 63336 | ENSG00000201648 | RNU4-91P | RNA, U4 small nuclear 91, pseudogene | -2.0000 | 1.0000 |
| 63335 | ENSG00000201133 | NA | -2.0000 | 1.0000 | |
| 63334 | ENSG00000199643 | RNU4-90P | RNA, U4 small nuclear 90, pseudogene | -2.0000 | 0.6228 |
| 63333 | ENSG00000199530 | NA | -2.0000 | 1.0000 | |
| 63332 | ENSG00000198157 | HMGN5 | high mobility group nucleosome binding domain 5 | -2.0000 | 1.0000 |
