Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481540

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481540


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M13Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254244 PAICSP4 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 4 2.5850 0.0005
2 ENSG00000267603 LINC01028 long intergenic non-protein coding RNA 1028 2.5850 0.0000
3 ENSG00000220184 HMGB3P18 high mobility group box 3 pseudogene 18 2.4096 0.0000
5 ENSG00000224521 novel transcript 2.3219 0.0024
6 ENSG00000227102 OR2AS1P olfactory receptor family 2 subfamily AS member 1 pseudogene 2.3219 0.0024
7 ENSG00000233780 HNRNPA1P30 heterogeneous nuclear ribonucleoprotein A1 pseudogene 30 2.3219 0.0024
8 ENSG00000242318 ribosomal protein L21 (RPL21) pseudogene 2.3219 0.0024
9 ENSG00000248656 novel transcript 2.3219 0.0024
10 ENSG00000259466 NPM1P47 nucleophosmin 1 pseudogene 47 2.3219 0.0000
63119 ENSG00000244540 RPL35AP29 ribosomal protein L35a pseudogene 29 -1.5850 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000250129 novel transcript -1.5850 1.0000
63127 ENSG00000249829 ubiquinol-cytochrome c reductase hinge protein (UQCRH ) pseudogene -1.5850 1.0000
63126 ENSG00000249444 WD repeat domain 70 (WDR70) pseudogene -1.5850 0.5819
63125 ENSG00000248988 PSME2P3 proteasome activator subunit 2 pseudogene 3 -1.5850 1.0000
63124 ENSG00000248676 novel transcript -1.5850 0.3496
63123 ENSG00000248327 NOL8P1 nucleolar protein 8 pseudogene 1 -1.5850 0.5819
63122 ENSG00000248132 LINC02101 long intergenic non-protein coding RNA 2101 -1.5850 1.0000
63121 ENSG00000248115 novel transcript -1.5850 0.3496
63120 ENSG00000247151 CSTF3-DT CSTF3 divergent transcript -1.5850 1.0000
63119 ENSG00000244540 RPL35AP29 ribosomal protein L35a pseudogene 29 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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