SHOGoiN Cell Methylome: GSM2481540

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481540


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M13Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254244 PAICSP4 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 4 2.5850 0.0005
2 ENSG00000267603 LINC01028 long intergenic non-protein coding RNA 1028 2.5850 0.0000
3 ENSG00000220184 HMGB3P18 high mobility group box 3 pseudogene 18 2.4096 0.0000
5 ENSG00000224521 novel transcript 2.3219 0.0024
6 ENSG00000227102 OR2AS1P olfactory receptor family 2 subfamily AS member 1 pseudogene 2.3219 0.0024
7 ENSG00000233780 HNRNPA1P30 heterogeneous nuclear ribonucleoprotein A1 pseudogene 30 2.3219 0.0024
8 ENSG00000242318 ribosomal protein L21 (RPL21) pseudogene 2.3219 0.0024
9 ENSG00000248656 novel transcript 2.3219 0.0024
10 ENSG00000259466 NPM1P47 nucleophosmin 1 pseudogene 47 2.3219 0.0000
63332 ENSG00000231090 MIR4422HG MIR4422 host gene -1.6142 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000128228 SDF2L1 stromal cell derived factor 2 like 1 -1.6176 0.0000
63340 ENSG00000261449 novel transcript, antisense to AP3M2 -1.6172 0.0000
63339 ENSG00000204923 FBXO48 F-box protein 48 -1.6170 0.0000
63338 ENSG00000284062 MIR4469 microRNA 4469 -1.6166 0.0002
63337 ENSG00000169188 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 -1.6166 0.0000
63336 ENSG00000266929 novel transcript -1.6159 0.0000
63335 ENSG00000267162 SDHDP1 succinate dehydrogenase complex subunit D pseudogene 1 -1.6153 0.0000
63334 ENSG00000091483 FH fumarate hydratase -1.6147 0.0000
63333 ENSG00000152332 UHMK1 U2AF homology motif kinase 1 -1.6146 0.0000
63332 ENSG00000231090 MIR4422HG MIR4422 host gene -1.6142 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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