Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481541

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481541


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M14Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000239473 RPL7P38 ribosomal protein L7 pseudogene 38 3.1699 0.0000
2 ENSG00000253571 transcriptional adaptor 1 (TADA1) pseudogene 2.4037 0.0000
3 ENSG00000118193 KIF14 kinesin family member 14 2.3219 0.0000
4 ENSG00000227735 CYCSP5 CYCS pseudogene 5 2.3219 0.0007
5 ENSG00000229132 EIF4A1P10 eukaryotic translation initiation factor 4A1 pseudogene 10 2.3219 0.0000
6 ENSG00000230301 OR5H6 olfactory receptor family 5 subfamily H member 6 2.3219 0.0000
7 ENSG00000235746 CTBP2P2 CTBP2 pseudogene 2 2.3219 0.0000
8 ENSG00000250826 HNRNPA3P13 heterogeneous nuclear ribonucleoprotein A3 pseudogene 13 2.3219 0.0007
9 ENSG00000257703 novel transcript 2.3219 0.0007
10 ENSG00000258455 novel transcript 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000284029 MIR6805 microRNA 6805 -1.7330 0.0000
63172 ENSG00000197024 ZNF398 zinc finger protein 398 -1.7325 0.0000
63171 ENSG00000227624 SNRPEP3 SNRPE pseudogene 3 -1.7324 0.2367
63170 ENSG00000255621 novel transcript -1.7318 0.0000
63169 ENSG00000183935 HTR7P1 5-hydroxytryptamine receptor 7 pseudogene 1 -1.7318 0.0000
63168 ENSG00000234618 RPSAP9 ribosomal protein SA pseudogene 9 -1.7314 0.0009
63167 ENSG00000253745 novel transcript -1.7313 0.0000
63166 ENSG00000187013 LINC02875 long intergenic non-protein coding RNA 2875 -1.7312 0.0000
63165 ENSG00000186973 FAM183A family with sequence similarity 183 member A -1.7301 0.0000
63164 ENSG00000180228 PRKRA protein activator of interferon induced protein kinase EIF2AK2 -1.7300 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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