SHOGoiN Cell Methylome: GSM2481542

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481542


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M15Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230066 FAM197Y3 family with sequence similarity 197 Y-linked member 3 3.0000 0.0000
2 ENSG00000270073 TSPY6P testis specific protein Y-linked 6, pseudogene 3.0000 0.0000
3 ENSG00000283376 novel pseudogene 3.0000 0.0000
4 ENSG00000204250 LINC00587 long intergenic non-protein coding RNA 587 2.8074 0.0000
5 ENSG00000254238 novel transcript 2.6680 0.0000
6 ENSG00000252990 RNU1-54P RNA, U1 small nuclear 54, pseudogene 2.4534 0.0000
7 ENSG00000201155 RNU1-24P RNA, U1 small nuclear 24, pseudogene 2.3219 0.0001
8 ENSG00000215853 RPTN repetin 2.3219 0.0001
9 ENSG00000220184 HMGB3P18 high mobility group box 3 pseudogene 18 2.3219 0.0001
10 ENSG00000222467 NA 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000253308 novel transcript -1.8844 0.0000
63340 ENSG00000264012 novel transcript, antisense to GATA6 -1.8838 0.0000
63339 ENSG00000260032 NORAD non-coding RNA activated by DNA damage -1.8827 0.0043
63338 ENSG00000255530 zinc finger with KRAB and SCAN domains 1 (ZKSCAN1) pseudogene -1.8820 0.0133
63337 ENSG00000182586 LINC00334 long intergenic non-protein coding RNA 334 -1.8814 0.0062
63336 ENSG00000240033 novel transcript -1.8813 0.0455
63335 ENSG00000189292 ALKAL2 ALK and LTK ligand 2 -1.8807 0.0040
63334 ENSG00000135074 ADAM19 ADAM metallopeptidase domain 19 -1.8806 0.0000
63333 ENSG00000249755 CD53 molecule (CD53) pseudogene -1.8798 0.0003
63332 ENSG00000236817 novel transcript -1.8795 0.0002

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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