Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481542

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481542


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M15Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230066 FAM197Y3 family with sequence similarity 197 Y-linked member 3 3.0000 0.0000
2 ENSG00000270073 TSPY6P testis specific protein Y-linked 6, pseudogene 3.0000 0.0000
3 ENSG00000283376 novel pseudogene 3.0000 0.0000
4 ENSG00000204250 LINC00587 long intergenic non-protein coding RNA 587 2.8074 0.0000
5 ENSG00000254238 novel transcript 2.6680 0.0000
6 ENSG00000252990 RNU1-54P RNA, U1 small nuclear 54, pseudogene 2.4534 0.0000
7 ENSG00000201155 RNU1-24P RNA, U1 small nuclear 24, pseudogene 2.3219 0.0001
8 ENSG00000215853 RPTN repetin 2.3219 0.0001
9 ENSG00000220184 HMGB3P18 high mobility group box 3 pseudogene 18 2.3219 0.0001
10 ENSG00000222467 Y RNA 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000185966 LCE3E late cornified envelope 3E -1.8000 0.6255
63127 ENSG00000149516 MS4A3 membrane spanning 4-domains A3 -1.8000 0.6255
63126 ENSG00000267200 MIR132 microRNA 132 -1.8000 0.0000
63125 ENSG00000249158 PCDHA11 protocadherin alpha 11 -1.7999 0.0000
63124 ENSG00000224609 FGGY-DT FGGY divergent transcript -1.7999 0.0001
63123 ENSG00000230989 HSBP1 heat shock factor binding protein 1 -1.7998 0.0303
63122 ENSG00000081853 PCDHGA2 protocadherin gamma subfamily A, 2 -1.7998 0.0000
63121 ENSG00000148826 NKX6-2 NK6 homeobox 2 -1.7995 0.0000
63120 ENSG00000186577 SMIM29 small integral membrane protein 29 -1.7990 0.0000
63119 ENSG00000177519 RPRM reprimo, TP53 dependent G2 arrest mediator homolog -1.7983 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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