Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481543

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481543 Profile download	7010000000000000000000-771	Sequence Read Archive	SRP074598	SRP074598_M16	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	4-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000242256	RN7SL57P	RNA, 7SL, cytoplasmic 57, pseudogene	3.6245	0.0000
2	ENSG00000198261	OR5BB1P	olfactory receptor family 5 subfamily BB member 1 pseudogene	3.0000	0.0000
3	ENSG00000278438	MIR7849	microRNA 7849	3.0000	0.0000
4	ENSG00000207105		Y RNA	2.8074	0.0000
5	ENSG00000260115		novel transcript, antisense to CDH8	2.8074	0.0000
6	ENSG00000134538	SLCO1B1	solute carrier organic anion transporter family member 1B1	2.5850	0.0002
7	ENSG00000223684	IFNWP18	interferon omega 1 pseudogene 18	2.5850	0.0002
8	ENSG00000226481	ACTR3BP2	ACTR3B pseudogene 2	2.5850	0.0002
9	ENSG00000229692	SOS1-IT1	SOS1 intronic transcript 1	2.5850	0.0000
10	ENSG00000237844		novel transcript	2.5850	0.0002

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000119326	CTNNAL1	catenin alpha like 1	-1.8393	0.0000
63127	ENSG00000150551	LYPD1	LY6/PLAUR domain containing 1	-1.8383	0.0000
63126	ENSG00000272717		novel transcript, antisense to SETD7	-1.8366	0.0000
63125	ENSG00000233493	TMEM238	transmembrane protein 238	-1.8365	0.0000
63124	ENSG00000198707	CEP290	centrosomal protein 290	-1.8362	0.0001
63123	ENSG00000233270	SNRPEP4	SNRPE pseudogene 4	-1.8362	0.0000
63122	ENSG00000259426		novel transcript, antisense to PAQR5	-1.8362	0.0000
63121	ENSG00000255118		novel transcript	-1.8352	0.0000
63120	ENSG00000232725		novel transcript	-1.8351	0.0001
63119	ENSG00000248949		novel transcript	-1.8350	0.0139

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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