SHOGoiN Cell Methylome: GSM2481543
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481543 Profile download | 7010000000000000000000-771 | Sequence Read Archive | SRP074598 | SRP074598_M16 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 4-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000242256 | RN7SL57P | RNA, 7SL, cytoplasmic 57, pseudogene | 3.6245 | 0.0000 |
| 2 | ENSG00000198261 | OR5BB1P | olfactory receptor family 5 subfamily BB member 1 pseudogene | 3.0000 | 0.0000 |
| 3 | ENSG00000278438 | MIR7849 | microRNA 7849 | 3.0000 | 0.0000 |
| 4 | ENSG00000207105 | NA | 2.8074 | 0.0000 | |
| 5 | ENSG00000260115 | novel transcript, antisense to CDH8 | 2.8074 | 0.0000 | |
| 6 | ENSG00000134538 | SLCO1B1 | solute carrier organic anion transporter family member 1B1 | 2.5850 | 0.0002 |
| 7 | ENSG00000223684 | IFNWP18 | interferon omega 1 pseudogene 18 | 2.5850 | 0.0002 |
| 8 | ENSG00000226481 | ACTR3BP2 | ACTR3B pseudogene 2 | 2.5850 | 0.0002 |
| 9 | ENSG00000229692 | SOS1-IT1 | SOS1 intronic transcript 1 | 2.5850 | 0.0000 |
| 10 | ENSG00000237844 | novel transcript | 2.5850 | 0.0002 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000268105 | ribosomal protein L5 (RPL5) pseudogene | -1.9272 | 0.0000 | |
| 63340 | ENSG00000201793 | RN7SKP9 | RN7SK pseudogene 9 | -1.9264 | 0.0000 |
| 63339 | ENSG00000205060 | SLC35B4 | solute carrier family 35 member B4 | -1.9260 | 0.0000 |
| 63338 | ENSG00000267414 | uncharacterized LOC101927943 | -1.9253 | 0.0023 | |
| 63337 | ENSG00000266017 | MIR4477B | microRNA 4477b | -1.9249 | 0.0000 |
| 63336 | ENSG00000109472 | CPE | carboxypeptidase E | -1.9234 | 0.0000 |
| 63335 | ENSG00000234589 | ribosomal protein L13a (RPL13A) pseudogene | -1.9231 | 0.0000 | |
| 63334 | ENSG00000258642 | novel transcript, antisense to RNASE3 | -1.9225 | 0.0013 | |
| 63333 | ENSG00000257364 | VENTXP3 | VENT homeobox pseudogene 3 | -1.9220 | 0.0151 |
| 63332 | ENSG00000234420 | ZNF37BP | zinc finger protein 37B, pseudogene | -1.9218 | 0.0000 |
