Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2481543
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481543
Profile download
7010000000000000000000-771
Sequence Read Archive
SRP074598
SRP074598_M16
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
4-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000242256
RN7SL57P
RNA, 7SL, cytoplasmic 57, pseudogene
3.6245
0.0000
2
ENSG00000198261
OR5BB1P
olfactory receptor family 5 subfamily BB member 1 pseudogene
3.0000
0.0000
3
ENSG00000278438
MIR7849
microRNA 7849
3.0000
0.0000
4
ENSG00000207105
Y RNA
2.8074
0.0000
5
ENSG00000260115
novel transcript, antisense to CDH8
2.8074
0.0000
6
ENSG00000134538
SLCO1B1
solute carrier organic anion transporter family member 1B1
2.5850
0.0002
7
ENSG00000223684
IFNWP18
interferon omega 1 pseudogene 18
2.5850
0.0002
8
ENSG00000226481
ACTR3BP2
ACTR3B pseudogene 2
2.5850
0.0002
9
ENSG00000229692
SOS1-IT1
SOS1 intronic transcript 1
2.5850
0.0000
10
ENSG00000237844
novel transcript
2.5850
0.0002
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000119326
CTNNAL1
catenin alpha like 1
-1.8393
0.0000
63127
ENSG00000150551
LYPD1
LY6/PLAUR domain containing 1
-1.8383
0.0000
63126
ENSG00000272717
novel transcript, antisense to SETD7
-1.8366
0.0000
63125
ENSG00000233493
TMEM238
transmembrane protein 238
-1.8365
0.0000
63124
ENSG00000198707
CEP290
centrosomal protein 290
-1.8362
0.0001
63123
ENSG00000233270
SNRPEP4
SNRPE pseudogene 4
-1.8362
0.0000
63122
ENSG00000259426
novel transcript, antisense to PAQR5
-1.8362
0.0000
63121
ENSG00000255118
novel transcript
-1.8352
0.0000
63120
ENSG00000232725
novel transcript
-1.8351
0.0001
63119
ENSG00000248949
novel transcript
-1.8350
0.0139
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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