SHOGoiN Cell Methylome: GSM2481543

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481543


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M16Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000242256 RN7SL57P RNA, 7SL, cytoplasmic 57, pseudogene 3.6245 0.0000
2 ENSG00000198261 OR5BB1P olfactory receptor family 5 subfamily BB member 1 pseudogene 3.0000 0.0000
3 ENSG00000278438 MIR7849 microRNA 7849 3.0000 0.0000
4 ENSG00000207105 NA 2.8074 0.0000
5 ENSG00000260115 novel transcript, antisense to CDH8 2.8074 0.0000
6 ENSG00000134538 SLCO1B1 solute carrier organic anion transporter family member 1B1 2.5850 0.0002
7 ENSG00000223684 IFNWP18 interferon omega 1 pseudogene 18 2.5850 0.0002
8 ENSG00000226481 ACTR3BP2 ACTR3B pseudogene 2 2.5850 0.0002
9 ENSG00000229692 SOS1-IT1 SOS1 intronic transcript 1 2.5850 0.0000
10 ENSG00000237844 novel transcript 2.5850 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000268105 ribosomal protein L5 (RPL5) pseudogene -1.9272 0.0000
63340 ENSG00000201793 RN7SKP9 RN7SK pseudogene 9 -1.9264 0.0000
63339 ENSG00000205060 SLC35B4 solute carrier family 35 member B4 -1.9260 0.0000
63338 ENSG00000267414 uncharacterized LOC101927943 -1.9253 0.0023
63337 ENSG00000266017 MIR4477B microRNA 4477b -1.9249 0.0000
63336 ENSG00000109472 CPE carboxypeptidase E -1.9234 0.0000
63335 ENSG00000234589 ribosomal protein L13a (RPL13A) pseudogene -1.9231 0.0000
63334 ENSG00000258642 novel transcript, antisense to RNASE3 -1.9225 0.0013
63333 ENSG00000257364 VENTXP3 VENT homeobox pseudogene 3 -1.9220 0.0151
63332 ENSG00000234420 ZNF37BP zinc finger protein 37B, pseudogene -1.9218 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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