Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481543

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481543


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M16Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000242256 RN7SL57P RNA, 7SL, cytoplasmic 57, pseudogene 3.6245 0.0000
2 ENSG00000198261 OR5BB1P olfactory receptor family 5 subfamily BB member 1 pseudogene 3.0000 0.0000
3 ENSG00000278438 MIR7849 microRNA 7849 3.0000 0.0000
4 ENSG00000207105 Y RNA 2.8074 0.0000
5 ENSG00000260115 novel transcript, antisense to CDH8 2.8074 0.0000
6 ENSG00000134538 SLCO1B1 solute carrier organic anion transporter family member 1B1 2.5850 0.0002
7 ENSG00000223684 IFNWP18 interferon omega 1 pseudogene 18 2.5850 0.0002
8 ENSG00000226481 ACTR3BP2 ACTR3B pseudogene 2 2.5850 0.0002
9 ENSG00000229692 SOS1-IT1 SOS1 intronic transcript 1 2.5850 0.0000
10 ENSG00000237844 novel transcript 2.5850 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000119326 CTNNAL1 catenin alpha like 1 -1.8393 0.0000
63127 ENSG00000150551 LYPD1 LY6/PLAUR domain containing 1 -1.8383 0.0000
63126 ENSG00000272717 novel transcript, antisense to SETD7 -1.8366 0.0000
63125 ENSG00000233493 TMEM238 transmembrane protein 238 -1.8365 0.0000
63124 ENSG00000198707 CEP290 centrosomal protein 290 -1.8362 0.0001
63123 ENSG00000233270 SNRPEP4 SNRPE pseudogene 4 -1.8362 0.0000
63122 ENSG00000259426 novel transcript, antisense to PAQR5 -1.8362 0.0000
63121 ENSG00000255118 novel transcript -1.8352 0.0000
63120 ENSG00000232725 novel transcript -1.8351 0.0001
63119 ENSG00000248949 novel transcript -1.8350 0.0139

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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