SHOGoiN Cell Methylome: GSM2481544

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481544


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M17Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000207394 RNU6-1060P RNA, U6 small nuclear 1060, pseudogene 2.5850 0.0000
2 ENSG00000212100 MIR764 microRNA 764 2.5850 0.0000
3 ENSG00000224907 RPL21P91 ribosomal protein L21 pseudogene 91 2.5850 0.0000
4 ENSG00000230097 ME2P1 malic enzyme 2 pseudogene 1 2.5850 0.0000
5 ENSG00000234233 KCNH1-IT1 KCNH1 intronic transcript 1 2.5850 0.0000
6 ENSG00000255012 OR5M1 olfactory receptor family 5 subfamily M member 1 2.5850 0.0000
7 ENSG00000269966 novel transcript 2.5850 0.0000
8 ENSG00000284299 novel protein 2.5850 0.0000
9 ENSG00000151834 GABRA2 gamma-aminobutyric acid type A receptor alpha2 subunit 2.3219 0.0000
10 ENSG00000184611 KCNH7 potassium voltage-gated channel subfamily H member 7 2.3219 0.0004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000218089 DNAJA1P4 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 4 -1.8623 0.0000
63340 ENSG00000131094 C1QL1 complement C1q like 1 -1.8621 0.0000
63339 ENSG00000280223 TEC -1.8617 0.6092
63338 ENSG00000239975 IGKV1D-33 immunoglobulin kappa variable 1D-33 -1.8617 0.6092
63337 ENSG00000233837 EIF3LP2 eukaryotic translation initiation factor 3 subunit L pseudogene 2 -1.8617 0.6092
63336 ENSG00000230696 novel transcript, sense intronic to SEPT10 -1.8617 0.6092
63335 ENSG00000215269 GAGE12G G antigen 12G -1.8617 0.1518
63334 ENSG00000139239 RPL14P1 ribosomal protein L14 pseudogene 1 -1.8617 0.6092
63333 ENSG00000125533 BHLHE23 basic helix-loop-helix family member e23 -1.8615 0.0000
63332 ENSG00000186665 C17orf58 chromosome 17 open reading frame 58 -1.8592 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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