Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481544

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481544


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M17Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000207394 RNU6-1060P RNA, U6 small nuclear 1060, pseudogene 2.5850 0.0000
2 ENSG00000212100 MIR764 microRNA 764 2.5850 0.0000
3 ENSG00000224907 RPL21P91 ribosomal protein L21 pseudogene 91 2.5850 0.0000
4 ENSG00000230097 ME2P1 malic enzyme 2 pseudogene 1 2.5850 0.0000
5 ENSG00000234233 KCNH1-IT1 KCNH1 intronic transcript 1 2.5850 0.0000
6 ENSG00000255012 OR5M1 olfactory receptor family 5 subfamily M member 1 2.5850 0.0000
7 ENSG00000269966 novel transcript 2.5850 0.0000
8 ENSG00000284299 novel protein 2.5850 0.0000
9 ENSG00000151834 GABRA2 gamma-aminobutyric acid type A receptor subunit alpha2 2.3219 0.0000
10 ENSG00000184611 KCNH7 potassium voltage-gated channel subfamily H member 7 2.3219 0.0004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000272755 novel transcript -1.7925 1.0000
63127 ENSG00000260153 RARRES2P10 retinoic acid receptor responder 2 pseudogene 10 -1.7925 0.0281
63126 ENSG00000253226 HAUS1P3 HAUS augmin like complex subunit 1 pseudogene 3 -1.7925 1.0000
63125 ENSG00000244535 ribosomal protein L34 (RPL34) pseudogene -1.7925 0.0281
63124 ENSG00000241767 LINC01324 long intergenic non-protein coding RNA 1324 -1.7925 0.0974
63123 ENSG00000237761 novel transcript -1.7925 0.3764
63122 ENSG00000231697 NANOGP5 Nanog homeobox pseudogene 5 -1.7925 0.3909
63121 ENSG00000229457 LINC01789 long intergenic non-protein coding RNA 1789 -1.7925 1.0000
63120 ENSG00000228492 RAB11FIP1P1 RAB11 family interacting protein 1 pseudogene 1 -1.7925 1.0000
63119 ENSG00000226816 novel transcript -1.7925 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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