Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481545

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481545 Profile download	7010000000000000000000-771	Sequence Read Archive	SRP074598	SRP074598_M18	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	4-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000251553	DDX18P4	DEAD-box helicase 18 pseudogene 4	2.6055	0.0000
2	ENSG00000225027	IFNWP4	interferon omega 1 pseudogene 4	2.5850	0.0000
3	ENSG00000221808	MIR1256	microRNA 1256	2.3219	0.0000
5	ENSG00000241295	ZBTB20-AS2	ZBTB20 antisense RNA 2	2.3219	0.0007
6	ENSG00000242197		ribosomal protein L37 (RPL37) pseudogene	2.3219	0.0000
7	ENSG00000248733		novel transcript	2.3219	0.0007
8	ENSG00000254132	MTND6P3	MT-ND6 pseudogene 3	2.2452	0.0000
9	ENSG00000257528	KRT8P19	keratin 8 pseudogene 19	2.1962	0.0000
10	ENSG00000251805		NA	2.1610	0.0000
63119	ENSG00000226507	IPMKP1	inositol polyphosphate multikinase pseudogene 1	-1.7564	0.0104

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000277941		NA	-1.7582	0.0001
63127	ENSG00000283101	BMS1P21	BMS1 pseudogene 21	-1.7582	0.0001
63126	ENSG00000201955	RNY3P1	RNY3 pseudogene 1	-1.7582	0.0064
63125	ENSG00000186019		novel transcript, antisense to ZNF225 and ZNF224	-1.7582	0.0064
63124	ENSG00000169509	CRCT1	cysteine rich C-terminal 1	-1.7582	0.0157
63123	ENSG00000108784	NAGLU	N-acetyl-alpha-glucosaminidase	-1.7579	0.0000
63122	ENSG00000259013		NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene	-1.7578	0.0000
63121	ENSG00000178394	HTR1A	5-hydroxytryptamine receptor 1A	-1.7575	0.0000
63120	ENSG00000253250	C8orf88	chromosome 8 open reading frame 88	-1.7571	0.0000
63119	ENSG00000226507	IPMKP1	inositol polyphosphate multikinase pseudogene 1	-1.7564	0.0104

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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