Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481545
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481545
Profile download
7010000000000000000000-771
Sequence Read Archive
SRP074598
SRP074598_M18
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
4-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000251553
DDX18P4
DEAD-box helicase 18 pseudogene 4
2.6055
0.0000
2
ENSG00000225027
IFNWP4
interferon omega 1 pseudogene 4
2.5850
0.0000
3
ENSG00000221808
MIR1256
microRNA 1256
2.3219
0.0000
5
ENSG00000241295
ZBTB20-AS2
ZBTB20 antisense RNA 2
2.3219
0.0007
6
ENSG00000242197
ribosomal protein L37 (RPL37) pseudogene
2.3219
0.0000
7
ENSG00000248733
novel transcript
2.3219
0.0007
8
ENSG00000254132
MTND6P3
MT-ND6 pseudogene 3
2.2452
0.0000
9
ENSG00000257528
KRT8P19
keratin 8 pseudogene 19
2.1962
0.0000
10
ENSG00000251805
NA
2.1610
0.0000
63119
ENSG00000226507
IPMKP1
inositol polyphosphate multikinase pseudogene 1
-1.7564
0.0104
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000277941
NA
-1.7582
0.0001
63127
ENSG00000283101
BMS1P21
BMS1 pseudogene 21
-1.7582
0.0001
63126
ENSG00000201955
RNY3P1
RNY3 pseudogene 1
-1.7582
0.0064
63125
ENSG00000186019
novel transcript, antisense to ZNF225 and ZNF224
-1.7582
0.0064
63124
ENSG00000169509
CRCT1
cysteine rich C-terminal 1
-1.7582
0.0157
63123
ENSG00000108784
NAGLU
N-acetyl-alpha-glucosaminidase
-1.7579
0.0000
63122
ENSG00000259013
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene
-1.7578
0.0000
63121
ENSG00000178394
HTR1A
5-hydroxytryptamine receptor 1A
-1.7575
0.0000
63120
ENSG00000253250
C8orf88
chromosome 8 open reading frame 88
-1.7571
0.0000
63119
ENSG00000226507
IPMKP1
inositol polyphosphate multikinase pseudogene 1
-1.7564
0.0104
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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