Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481545

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481545


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M18Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251553 DDX18P4 DEAD-box helicase 18 pseudogene 4 2.6055 0.0000
2 ENSG00000225027 IFNWP4 interferon omega 1 pseudogene 4 2.5850 0.0000
3 ENSG00000221808 MIR1256 microRNA 1256 2.3219 0.0000
5 ENSG00000241295 ZBTB20-AS2 ZBTB20 antisense RNA 2 2.3219 0.0007
6 ENSG00000242197 ribosomal protein L37 (RPL37) pseudogene 2.3219 0.0000
7 ENSG00000248733 novel transcript 2.3219 0.0007
8 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.2452 0.0000
9 ENSG00000257528 KRT8P19 keratin 8 pseudogene 19 2.1962 0.0000
10 ENSG00000251805 NA 2.1610 0.0000
63119 ENSG00000226507 IPMKP1 inositol polyphosphate multikinase pseudogene 1 -1.7564 0.0104

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000277941 NA -1.7582 0.0001
63127 ENSG00000283101 BMS1P21 BMS1 pseudogene 21 -1.7582 0.0001
63126 ENSG00000201955 RNY3P1 RNY3 pseudogene 1 -1.7582 0.0064
63125 ENSG00000186019 novel transcript, antisense to ZNF225 and ZNF224 -1.7582 0.0064
63124 ENSG00000169509 CRCT1 cysteine rich C-terminal 1 -1.7582 0.0157
63123 ENSG00000108784 NAGLU N-acetyl-alpha-glucosaminidase -1.7579 0.0000
63122 ENSG00000259013 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene -1.7578 0.0000
63121 ENSG00000178394 HTR1A 5-hydroxytryptamine receptor 1A -1.7575 0.0000
63120 ENSG00000253250 C8orf88 chromosome 8 open reading frame 88 -1.7571 0.0000
63119 ENSG00000226507 IPMKP1 inositol polyphosphate multikinase pseudogene 1 -1.7564 0.0104

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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