SHOGoiN Cell Methylome: GSM2481545
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481545 Profile download | 7010000000000000000000-771 | Sequence Read Archive | SRP074598 | SRP074598_M18 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 4-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000251553 | DDX18P4 | DEAD-box helicase 18 pseudogene 4 | 2.6055 | 0.0000 |
| 2 | ENSG00000225027 | IFNWP4 | interferon omega 1 pseudogene 4 | 2.5850 | 0.0000 |
| 3 | ENSG00000221808 | MIR1256 | microRNA 1256 | 2.3219 | 0.0000 |
| 5 | ENSG00000241295 | ZBTB20-AS2 | ZBTB20 antisense RNA 2 | 2.3219 | 0.0007 |
| 6 | ENSG00000242197 | ribosomal protein L37 (RPL37) pseudogene | 2.3219 | 0.0000 | |
| 7 | ENSG00000248733 | novel transcript | 2.3219 | 0.0007 | |
| 8 | ENSG00000254132 | MTND6P3 | MT-ND6 pseudogene 3 | 2.2452 | 0.0000 |
| 9 | ENSG00000257528 | KRT8P19 | keratin 8 pseudogene 19 | 2.1962 | 0.0000 |
| 10 | ENSG00000251805 | NA | 2.1610 | 0.0000 | |
| 63332 | ENSG00000283057 | parathymosin (PTMS) pseudogene | -1.8288 | 0.0168 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000278048 | NA | -1.8320 | 0.0000 | |
| 63340 | ENSG00000207425 | NA | -1.8319 | 0.0000 | |
| 63339 | ENSG00000200926 | RNU6-960P | RNA, U6 small nuclear 960, pseudogene | -1.8312 | 0.0000 |
| 63338 | ENSG00000075303 | SLC25A40 | solute carrier family 25 member 40 | -1.8312 | 0.0000 |
| 63337 | ENSG00000105939 | ZC3HAV1 | zinc finger CCCH-type containing, antiviral 1 | -1.8309 | 0.0000 |
| 63336 | ENSG00000236394 | novel transcript | -1.8309 | 0.0000 | |
| 63335 | ENSG00000177283 | FZD8 | frizzled class receptor 8 | -1.8304 | 0.0000 |
| 63334 | ENSG00000260148 | novel transcript, antisense to CPNE2 | -1.8304 | 0.0000 | |
| 63333 | ENSG00000259132 | novel protein | -1.8292 | 0.0000 | |
| 63332 | ENSG00000283057 | parathymosin (PTMS) pseudogene | -1.8288 | 0.0168 |
