SHOGoiN Cell Methylome: GSM2481545

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481545


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M18Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251553 DDX18P4 DEAD-box helicase 18 pseudogene 4 2.6055 0.0000
2 ENSG00000225027 IFNWP4 interferon omega 1 pseudogene 4 2.5850 0.0000
3 ENSG00000221808 MIR1256 microRNA 1256 2.3219 0.0000
5 ENSG00000241295 ZBTB20-AS2 ZBTB20 antisense RNA 2 2.3219 0.0007
6 ENSG00000242197 ribosomal protein L37 (RPL37) pseudogene 2.3219 0.0000
7 ENSG00000248733 novel transcript 2.3219 0.0007
8 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.2452 0.0000
9 ENSG00000257528 KRT8P19 keratin 8 pseudogene 19 2.1962 0.0000
10 ENSG00000251805 NA 2.1610 0.0000
63332 ENSG00000283057 parathymosin (PTMS) pseudogene -1.8288 0.0168

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000278048 NA -1.8320 0.0000
63340 ENSG00000207425 NA -1.8319 0.0000
63339 ENSG00000200926 RNU6-960P RNA, U6 small nuclear 960, pseudogene -1.8312 0.0000
63338 ENSG00000075303 SLC25A40 solute carrier family 25 member 40 -1.8312 0.0000
63337 ENSG00000105939 ZC3HAV1 zinc finger CCCH-type containing, antiviral 1 -1.8309 0.0000
63336 ENSG00000236394 novel transcript -1.8309 0.0000
63335 ENSG00000177283 FZD8 frizzled class receptor 8 -1.8304 0.0000
63334 ENSG00000260148 novel transcript, antisense to CPNE2 -1.8304 0.0000
63333 ENSG00000259132 novel protein -1.8292 0.0000
63332 ENSG00000283057 parathymosin (PTMS) pseudogene -1.8288 0.0168

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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