SHOGoiN Cell Methylome: GSM2481546
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481546 Profile download | 7010000000000000000000-771 | Sequence Read Archive | SRP074598 | SRP074598_M19 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 4-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000206998 | NA | 2.0544 | 0.0000 | |
| 2 | ENSG00000251340 | MTCYBP35 | MT-CYB pseudogene 35 | 2.0120 | 0.0000 |
| 3 | ENSG00000173467 | AGR3 | anterior gradient 3, protein disulphide isomerase family member | 2.0000 | 0.0090 |
| 4 | ENSG00000257851 | HNRNPA3P10 | heterogeneous nuclear ribonucleoprotein A3 pseudogene 10 | 2.0000 | 0.0090 |
| 5 | ENSG00000263755 | RN7SL498P | RNA, 7SL, cytoplasmic 498, pseudogene | 2.0000 | 0.0090 |
| 6 | ENSG00000267557 | novel transcript, antisense to ANKRD27 | 2.0000 | 0.0000 | |
| 7 | ENSG00000275632 | novel transcript | 2.0000 | 0.0090 | |
| 8 | ENSG00000278719 | MCM8-AS1 | MCM8 antisense RNA 1 | 2.0000 | 0.0090 |
| 9 | ENSG00000248851 | fibroblast growth factor binding protein 1 (FGFBP1) pseudogene | 1.6667 | 0.0000 | |
| 10 | ENSG00000021355 | SERPINB1 | serpin family B member 1 | 1.5850 | 0.0432 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000196605 | ZNF846 | zinc finger protein 846 | -1.5850 | 0.5867 |
| 63340 | ENSG00000196289 | BECN2 | beclin 2 | -1.5850 | 1.0000 |
| 63339 | ENSG00000196267 | ZNF836 | zinc finger protein 836 | -1.5850 | 0.3558 |
| 63338 | ENSG00000186615 | KTN1-AS1 | KTN1 antisense RNA 1 | -1.5850 | 0.0051 |
| 63337 | ENSG00000185899 | TAS2R60 | taste 2 receptor member 60 | -1.5850 | 1.0000 |
| 63336 | ENSG00000185340 | GAS2L1 | growth arrest specific 2 like 1 | -1.5850 | 0.2188 |
| 63335 | ENSG00000185074 | OR7E31P | olfactory receptor family 7 subfamily E member 31 pseudogene | -1.5850 | 1.0000 |
| 63334 | ENSG00000184571 | PIWIL3 | piwi like RNA-mediated gene silencing 3 | -1.5850 | 0.5867 |
| 63333 | ENSG00000182574 | chondroitin beta1,4 N-acetylgalactosaminyltransferase (ChGn) pseudogene | -1.5850 | 1.0000 | |
| 63332 | ENSG00000182487 | NCF1B | neutrophil cytosolic factor 1B pseudogene | -1.5850 | 0.2188 |
