Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481546

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481546 Profile download	7010000000000000000000-771	Sequence Read Archive	SRP074598	SRP074598_M19	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	4-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000206998		Y RNA	2.0544	0.0000
2	ENSG00000251340	MTCYBP35	MT-CYB pseudogene 35	2.0120	0.0000
3	ENSG00000173467	AGR3	anterior gradient 3, protein disulphide isomerase family member	2.0000	0.0090
4	ENSG00000257851	HNRNPA3P10	heterogeneous nuclear ribonucleoprotein A3 pseudogene 10	2.0000	0.0090
5	ENSG00000263755	RN7SL498P	RNA, 7SL, cytoplasmic 498, pseudogene	2.0000	0.0090
6	ENSG00000267557		novel transcript, antisense to ANKRD27	2.0000	0.0000
7	ENSG00000275632		novel transcript	2.0000	0.0090
8	ENSG00000278719	MCM8-AS1	MCM8 antisense RNA 1	2.0000	0.0090
9	ENSG00000248851		fibroblast growth factor binding protein 1 (FGFBP1) pseudogene	1.6667	0.0000
10	ENSG00000021355	SERPINB1	serpin family B member 1	1.5850	0.0432

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000146950	SHROOM2	shroom family member 2	-1.4512	0.0002
63127	ENSG00000170689	HOXB9	homeobox B9	-1.4500	0.0000
63126	ENSG00000274532		family with sequence similarity 208, member A (FAM208A)	-1.4500	0.0081
63125	ENSG00000266039	MIR4509-2	microRNA 4509-2	-1.4500	0.0081
63124	ENSG00000255931		novel transcript	-1.4500	0.0081
63123	ENSG00000261934	PCDHGA9	protocadherin gamma subfamily A, 9	-1.4465	0.0000
63122	ENSG00000204889	KRT40	keratin 40	-1.4452	0.0229
63121	ENSG00000016391	CHDH	choline dehydrogenase	-1.4447	0.0002
63120	ENSG00000255823	MTRNR2L8	MT-RNR2 like 8	-1.4411	0.0057
63119	ENSG00000116675	DNAJC6	DnaJ heat shock protein family (Hsp40) member C6	-1.4409	0.0010

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...