SHOGoiN Cell Methylome: GSM2481546

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481546


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M19Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206998 NA 2.0544 0.0000
2 ENSG00000251340 MTCYBP35 MT-CYB pseudogene 35 2.0120 0.0000
3 ENSG00000173467 AGR3 anterior gradient 3, protein disulphide isomerase family member 2.0000 0.0090
4 ENSG00000257851 HNRNPA3P10 heterogeneous nuclear ribonucleoprotein A3 pseudogene 10 2.0000 0.0090
5 ENSG00000263755 RN7SL498P RNA, 7SL, cytoplasmic 498, pseudogene 2.0000 0.0090
6 ENSG00000267557 novel transcript, antisense to ANKRD27 2.0000 0.0000
7 ENSG00000275632 novel transcript 2.0000 0.0090
8 ENSG00000278719 MCM8-AS1 MCM8 antisense RNA 1 2.0000 0.0090
9 ENSG00000248851 fibroblast growth factor binding protein 1 (FGFBP1) pseudogene 1.6667 0.0000
10 ENSG00000021355 SERPINB1 serpin family B member 1 1.5850 0.0432

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000196605 ZNF846 zinc finger protein 846 -1.5850 0.5867
63340 ENSG00000196289 BECN2 beclin 2 -1.5850 1.0000
63339 ENSG00000196267 ZNF836 zinc finger protein 836 -1.5850 0.3558
63338 ENSG00000186615 KTN1-AS1 KTN1 antisense RNA 1 -1.5850 0.0051
63337 ENSG00000185899 TAS2R60 taste 2 receptor member 60 -1.5850 1.0000
63336 ENSG00000185340 GAS2L1 growth arrest specific 2 like 1 -1.5850 0.2188
63335 ENSG00000185074 OR7E31P olfactory receptor family 7 subfamily E member 31 pseudogene -1.5850 1.0000
63334 ENSG00000184571 PIWIL3 piwi like RNA-mediated gene silencing 3 -1.5850 0.5867
63333 ENSG00000182574 chondroitin beta1,4 N-acetylgalactosaminyltransferase (ChGn) pseudogene -1.5850 1.0000
63332 ENSG00000182487 NCF1B neutrophil cytosolic factor 1B pseudogene -1.5850 0.2188

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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