Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481546

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481546


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M19Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206998 Y RNA 2.0544 0.0000
2 ENSG00000251340 MTCYBP35 MT-CYB pseudogene 35 2.0120 0.0000
3 ENSG00000173467 AGR3 anterior gradient 3, protein disulphide isomerase family member 2.0000 0.0090
4 ENSG00000257851 HNRNPA3P10 heterogeneous nuclear ribonucleoprotein A3 pseudogene 10 2.0000 0.0090
5 ENSG00000263755 RN7SL498P RNA, 7SL, cytoplasmic 498, pseudogene 2.0000 0.0090
6 ENSG00000267557 novel transcript, antisense to ANKRD27 2.0000 0.0000
7 ENSG00000275632 novel transcript 2.0000 0.0090
8 ENSG00000278719 MCM8-AS1 MCM8 antisense RNA 1 2.0000 0.0090
9 ENSG00000248851 fibroblast growth factor binding protein 1 (FGFBP1) pseudogene 1.6667 0.0000
10 ENSG00000021355 SERPINB1 serpin family B member 1 1.5850 0.0432

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000146950 SHROOM2 shroom family member 2 -1.4512 0.0002
63127 ENSG00000170689 HOXB9 homeobox B9 -1.4500 0.0000
63126 ENSG00000274532 family with sequence similarity 208, member A (FAM208A) -1.4500 0.0081
63125 ENSG00000266039 MIR4509-2 microRNA 4509-2 -1.4500 0.0081
63124 ENSG00000255931 novel transcript -1.4500 0.0081
63123 ENSG00000261934 PCDHGA9 protocadherin gamma subfamily A, 9 -1.4465 0.0000
63122 ENSG00000204889 KRT40 keratin 40 -1.4452 0.0229
63121 ENSG00000016391 CHDH choline dehydrogenase -1.4447 0.0002
63120 ENSG00000255823 MTRNR2L8 MT-RNR2 like 8 -1.4411 0.0057
63119 ENSG00000116675 DNAJC6 DnaJ heat shock protein family (Hsp40) member C6 -1.4409 0.0010

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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