Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481546
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481546
Profile download
7010000000000000000000-771
Sequence Read Archive
SRP074598
SRP074598_M19
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
4-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000206998
Y RNA
2.0544
0.0000
2
ENSG00000251340
MTCYBP35
MT-CYB pseudogene 35
2.0120
0.0000
3
ENSG00000173467
AGR3
anterior gradient 3, protein disulphide isomerase family member
2.0000
0.0090
4
ENSG00000257851
HNRNPA3P10
heterogeneous nuclear ribonucleoprotein A3 pseudogene 10
2.0000
0.0090
5
ENSG00000263755
RN7SL498P
RNA, 7SL, cytoplasmic 498, pseudogene
2.0000
0.0090
6
ENSG00000267557
novel transcript, antisense to ANKRD27
2.0000
0.0000
7
ENSG00000275632
novel transcript
2.0000
0.0090
8
ENSG00000278719
MCM8-AS1
MCM8 antisense RNA 1
2.0000
0.0090
9
ENSG00000248851
fibroblast growth factor binding protein 1 (FGFBP1) pseudogene
1.6667
0.0000
10
ENSG00000021355
SERPINB1
serpin family B member 1
1.5850
0.0432
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000146950
SHROOM2
shroom family member 2
-1.4512
0.0002
63127
ENSG00000170689
HOXB9
homeobox B9
-1.4500
0.0000
63126
ENSG00000274532
family with sequence similarity 208, member A (FAM208A)
-1.4500
0.0081
63125
ENSG00000266039
MIR4509-2
microRNA 4509-2
-1.4500
0.0081
63124
ENSG00000255931
novel transcript
-1.4500
0.0081
63123
ENSG00000261934
PCDHGA9
protocadherin gamma subfamily A, 9
-1.4465
0.0000
63122
ENSG00000204889
KRT40
keratin 40
-1.4452
0.0229
63121
ENSG00000016391
CHDH
choline dehydrogenase
-1.4447
0.0002
63120
ENSG00000255823
MTRNR2L8
MT-RNR2 like 8
-1.4411
0.0057
63119
ENSG00000116675
DNAJC6
DnaJ heat shock protein family (Hsp40) member C6
-1.4409
0.0010
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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