SHOGoiN Cell Methylome: GSM2481547
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481547 Profile download | 7010000000000000000000-771 | Sequence Read Archive | SRP074598 | SRP074598_M20 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 4-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000242256 | RN7SL57P | RNA, 7SL, cytoplasmic 57, pseudogene | 2.3219 | 0.0011 |
| 2 | ENSG00000229944 | EIF4EP2 | eukaryotic translation initiation factor 4E pseudogene 2 | 2.0000 | 0.0000 |
| 3 | ENSG00000273203 | novel transcript | 2.0000 | 0.0000 | |
| 4 | ENSG00000124193 | SRSF6 | serine and arginine rich splicing factor 6 | 1.8931 | 0.0000 |
| 5 | ENSG00000254132 | MTND6P3 | MT-ND6 pseudogene 3 | 1.7955 | 0.0000 |
| 6 | ENSG00000147724 | FAM135B | family with sequence similarity 135 member B | 1.7143 | 0.0000 |
| 7 | ENSG00000020922 | MRE11 | MRE11 homolog, double strand break repair nuclease | 1.5850 | 0.0011 |
| 8 | ENSG00000038219 | BOD1L1 | biorientation of chromosomes in cell division 1 like 1 | 1.5850 | 0.0011 |
| 9 | ENSG00000075711 | DLG1 | discs large MAGUK scaffold protein 1 | 1.5850 | 0.0331 |
| 10 | ENSG00000100234 | TIMP3 | TIMP metallopeptidase inhibitor 3 | 1.5850 | 0.0331 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000157450 | RNF111 | ring finger protein 111 | -1.5850 | 1.0000 |
| 63340 | ENSG00000156869 | FRRS1 | ferric chelate reductase 1 | -1.5850 | 0.6000 |
| 63339 | ENSG00000154265 | ABCA5 | ATP binding cassette subfamily A member 5 | -1.5850 | 1.0000 |
| 63338 | ENSG00000153714 | LURAP1L | leucine rich adaptor protein 1 like | -1.5850 | 0.0888 |
| 63337 | ENSG00000149761 | NUDT22 | nudix hydrolase 22 | -1.5850 | 1.0000 |
| 63336 | ENSG00000149743 | TRPT1 | tRNA phosphotransferase 1 | -1.5850 | 1.0000 |
| 63335 | ENSG00000149308 | NPAT | nuclear protein, coactivator of histone transcription | -1.5850 | 1.0000 |
| 63334 | ENSG00000146409 | SLC18B1 | solute carrier family 18 member B1 | -1.5850 | 0.6000 |
| 63333 | ENSG00000143382 | ADAMTSL4 | ADAMTS like 4 | -1.5850 | 0.2255 |
| 63332 | ENSG00000143324 | XPR1 | xenotropic and polytropic retrovirus receptor 1 | -1.5850 | 1.0000 |
