SHOGoiN Cell Methylome: GSM2481547

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481547


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M20Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000242256 RN7SL57P RNA, 7SL, cytoplasmic 57, pseudogene 2.3219 0.0011
2 ENSG00000229944 EIF4EP2 eukaryotic translation initiation factor 4E pseudogene 2 2.0000 0.0000
3 ENSG00000273203 novel transcript 2.0000 0.0000
4 ENSG00000124193 SRSF6 serine and arginine rich splicing factor 6 1.8931 0.0000
5 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 1.7955 0.0000
6 ENSG00000147724 FAM135B family with sequence similarity 135 member B 1.7143 0.0000
7 ENSG00000020922 MRE11 MRE11 homolog, double strand break repair nuclease 1.5850 0.0011
8 ENSG00000038219 BOD1L1 biorientation of chromosomes in cell division 1 like 1 1.5850 0.0011
9 ENSG00000075711 DLG1 discs large MAGUK scaffold protein 1 1.5850 0.0331
10 ENSG00000100234 TIMP3 TIMP metallopeptidase inhibitor 3 1.5850 0.0331

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000157450 RNF111 ring finger protein 111 -1.5850 1.0000
63340 ENSG00000156869 FRRS1 ferric chelate reductase 1 -1.5850 0.6000
63339 ENSG00000154265 ABCA5 ATP binding cassette subfamily A member 5 -1.5850 1.0000
63338 ENSG00000153714 LURAP1L leucine rich adaptor protein 1 like -1.5850 0.0888
63337 ENSG00000149761 NUDT22 nudix hydrolase 22 -1.5850 1.0000
63336 ENSG00000149743 TRPT1 tRNA phosphotransferase 1 -1.5850 1.0000
63335 ENSG00000149308 NPAT nuclear protein, coactivator of histone transcription -1.5850 1.0000
63334 ENSG00000146409 SLC18B1 solute carrier family 18 member B1 -1.5850 0.6000
63333 ENSG00000143382 ADAMTSL4 ADAMTS like 4 -1.5850 0.2255
63332 ENSG00000143324 XPR1 xenotropic and polytropic retrovirus receptor 1 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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