Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481547
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481547
Profile download
7010000000000000000000-771
Sequence Read Archive
SRP074598
SRP074598_M20
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
4-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000242256
RN7SL57P
RNA, 7SL, cytoplasmic 57, pseudogene
2.3219
0.0011
2
ENSG00000229944
EIF4EP2
eukaryotic translation initiation factor 4E pseudogene 2
2.0000
0.0000
3
ENSG00000273203
novel transcript
2.0000
0.0000
4
ENSG00000124193
SRSF6
serine and arginine rich splicing factor 6
1.8931
0.0000
5
ENSG00000254132
MTND6P3
MT-ND6 pseudogene 3
1.7955
0.0000
6
ENSG00000147724
FAM135B
family with sequence similarity 135 member B
1.7143
0.0000
7
ENSG00000020922
MRE11
MRE11 homolog, double strand break repair nuclease
1.5850
0.0011
8
ENSG00000038219
BOD1L1
biorientation of chromosomes in cell division 1 like 1
1.5850
0.0011
9
ENSG00000075711
DLG1
discs large MAGUK scaffold protein 1
1.5850
0.0331
10
ENSG00000100234
TIMP3
TIMP metallopeptidase inhibitor 3
1.5850
0.0331
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000213157
RPL32P10
ribosomal protein L32 pseudogene 10
-1.4406
0.1408
63127
ENSG00000144228
SPOPL
speckle type BTB/POZ protein like
-1.4406
0.6000
63126
ENSG00000270273
transmembrane protein 230 (TMEM230) pseudogene
-1.4404
0.0061
63125
ENSG00000276663
novel transcript, antisense to ARL2BP
-1.4400
0.0116
63124
ENSG00000168255
POLR2J3
RNA polymerase II subunit J3
-1.4395
0.0001
63123
ENSG00000284503
MIR3652
microRNA 3652
-1.4387
0.0015
63122
ENSG00000280377
tec
-1.4387
0.0888
63121
ENSG00000279046
novel transcript
-1.4387
0.0888
63120
ENSG00000275747
IGHV3-79
immunoglobulin heavy variable 3-79 (pseudogene)
-1.4387
0.3637
63119
ENSG00000271242
PRELID3BP2
PRELI domain containing 3B pseudogene 2
-1.4387
0.3637
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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