Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481547

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481547


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M20Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000242256 RN7SL57P RNA, 7SL, cytoplasmic 57, pseudogene 2.3219 0.0011
2 ENSG00000229944 EIF4EP2 eukaryotic translation initiation factor 4E pseudogene 2 2.0000 0.0000
3 ENSG00000273203 novel transcript 2.0000 0.0000
4 ENSG00000124193 SRSF6 serine and arginine rich splicing factor 6 1.8931 0.0000
5 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 1.7955 0.0000
6 ENSG00000147724 FAM135B family with sequence similarity 135 member B 1.7143 0.0000
7 ENSG00000020922 MRE11 MRE11 homolog, double strand break repair nuclease 1.5850 0.0011
8 ENSG00000038219 BOD1L1 biorientation of chromosomes in cell division 1 like 1 1.5850 0.0011
9 ENSG00000075711 DLG1 discs large MAGUK scaffold protein 1 1.5850 0.0331
10 ENSG00000100234 TIMP3 TIMP metallopeptidase inhibitor 3 1.5850 0.0331

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000213157 RPL32P10 ribosomal protein L32 pseudogene 10 -1.4406 0.1408
63127 ENSG00000144228 SPOPL speckle type BTB/POZ protein like -1.4406 0.6000
63126 ENSG00000270273 transmembrane protein 230 (TMEM230) pseudogene -1.4404 0.0061
63125 ENSG00000276663 novel transcript, antisense to ARL2BP -1.4400 0.0116
63124 ENSG00000168255 POLR2J3 RNA polymerase II subunit J3 -1.4395 0.0001
63123 ENSG00000284503 MIR3652 microRNA 3652 -1.4387 0.0015
63122 ENSG00000280377 tec -1.4387 0.0888
63121 ENSG00000279046 novel transcript -1.4387 0.0888
63120 ENSG00000275747 IGHV3-79 immunoglobulin heavy variable 3-79 (pseudogene) -1.4387 0.3637
63119 ENSG00000271242 PRELID3BP2 PRELI domain containing 3B pseudogene 2 -1.4387 0.3637

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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