Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481547

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481547 Profile download	7010000000000000000000-771	Sequence Read Archive	SRP074598	SRP074598_M20	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	4-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000242256	RN7SL57P	RNA, 7SL, cytoplasmic 57, pseudogene	2.3219	0.0011
2	ENSG00000229944	EIF4EP2	eukaryotic translation initiation factor 4E pseudogene 2	2.0000	0.0000
3	ENSG00000273203		novel transcript	2.0000	0.0000
4	ENSG00000124193	SRSF6	serine and arginine rich splicing factor 6	1.8931	0.0000
5	ENSG00000254132	MTND6P3	MT-ND6 pseudogene 3	1.7955	0.0000
6	ENSG00000147724	FAM135B	family with sequence similarity 135 member B	1.7143	0.0000
7	ENSG00000020922	MRE11	MRE11 homolog, double strand break repair nuclease	1.5850	0.0011
8	ENSG00000038219	BOD1L1	biorientation of chromosomes in cell division 1 like 1	1.5850	0.0011
9	ENSG00000075711	DLG1	discs large MAGUK scaffold protein 1	1.5850	0.0331
10	ENSG00000100234	TIMP3	TIMP metallopeptidase inhibitor 3	1.5850	0.0331

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000213157	RPL32P10	ribosomal protein L32 pseudogene 10	-1.4406	0.1408
63127	ENSG00000144228	SPOPL	speckle type BTB/POZ protein like	-1.4406	0.6000
63126	ENSG00000270273		transmembrane protein 230 (TMEM230) pseudogene	-1.4404	0.0061
63125	ENSG00000276663		novel transcript, antisense to ARL2BP	-1.4400	0.0116
63124	ENSG00000168255	POLR2J3	RNA polymerase II subunit J3	-1.4395	0.0001
63123	ENSG00000284503	MIR3652	microRNA 3652	-1.4387	0.0015
63122	ENSG00000280377		tec	-1.4387	0.0888
63121	ENSG00000279046		novel transcript	-1.4387	0.0888
63120	ENSG00000275747	IGHV3-79	immunoglobulin heavy variable 3-79 (pseudogene)	-1.4387	0.3637
63119	ENSG00000271242	PRELID3BP2	PRELI domain containing 3B pseudogene 2	-1.4387	0.3637

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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