SHOGoiN Cell Methylome: GSM2481548
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481548 Profile download | 7010000000000000000000-771 | Sequence Read Archive | SRP074598 | SRP074598_M21 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 4-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000137575 | SDCBP | syndecan binding protein | 2.0000 | 0.0027 |
| 2 | ENSG00000152443 | ZNF776 | zinc finger protein 776 | 2.0000 | 0.0027 |
| 3 | ENSG00000207785 | MIR500A | microRNA 500a | 2.0000 | 0.0027 |
| 4 | ENSG00000207970 | MIR660 | microRNA 660 | 2.0000 | 0.0000 |
| 5 | ENSG00000208015 | MIR362 | microRNA 362 | 2.0000 | 0.0027 |
| 6 | ENSG00000211538 | MIR501 | microRNA 501 | 2.0000 | 0.0027 |
| 7 | ENSG00000226989 | chromosome 7 open reading frame 44 (C7orf44) pseudogene | 2.0000 | 0.0000 | |
| 8 | ENSG00000239057 | MIR500B | microRNA 500b | 2.0000 | 0.0027 |
| 9 | ENSG00000242256 | RN7SL57P | RNA, 7SL, cytoplasmic 57, pseudogene | 2.0000 | 0.0000 |
| 10 | ENSG00000261077 | ribosomal protein L18a (RPL18A) pseudogene | 2.0000 | 0.0027 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000229971 | novel transcript | -1.5850 | 1.0000 | |
| 63340 | ENSG00000229937 | PRPS1L1 | phosphoribosyl pyrophosphate synthetase 1 like 1 | -1.5850 | 1.0000 |
| 63339 | ENSG00000229899 | pseudogene similar to part of the cytochrome c oxidase subunit I (COX1) | -1.5850 | 1.0000 | |
| 63338 | ENSG00000229840 | ISCA1P2 | iron-sulfur cluster assembly 1 pseudogene 2 | -1.5850 | 1.0000 |
| 63337 | ENSG00000229733 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene | -1.5850 | 1.0000 | |
| 63336 | ENSG00000229629 | transcription elongation factor B (SIII) pseudogene | -1.5850 | 1.0000 | |
| 63335 | ENSG00000229572 | EIF4BP4 | eukaryotic translation initiation factor 4B pseudogene 4 | -1.5850 | 1.0000 |
| 63334 | ENSG00000229368 | novel transcript, sense overlapping STIM1 | -1.5850 | 1.0000 | |
| 63332 | ENSG00000229225 | novel transcript | -1.5850 | 0.6103 | |
| 10 | ENSG00000261077 | ribosomal protein L18a (RPL18A) pseudogene | 2.0000 | 0.0027 |
