Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481548

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481548 Profile download	7010000000000000000000-771	Sequence Read Archive	SRP074598	SRP074598_M21	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	4-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000137575	SDCBP	syndecan binding protein	2.0000	0.0027
2	ENSG00000152443	ZNF776	zinc finger protein 776	2.0000	0.0027
3	ENSG00000207785	MIR500A	microRNA 500a	2.0000	0.0027
4	ENSG00000207970	MIR660	microRNA 660	2.0000	0.0000
5	ENSG00000208015	MIR362	microRNA 362	2.0000	0.0027
6	ENSG00000211538	MIR501	microRNA 501	2.0000	0.0027
7	ENSG00000226989		chromosome 7 open reading frame 44 (C7orf44) pseudogene	2.0000	0.0000
8	ENSG00000239057	MIR500B	microRNA 500b	2.0000	0.0027
9	ENSG00000242256	RN7SL57P	RNA, 7SL, cytoplasmic 57, pseudogene	2.0000	0.0000
10	ENSG00000261077		ribosomal protein L18a (RPL18A) pseudogene	2.0000	0.0027

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000249310	APOBEC3B-AS1	APOBEC3B antisense RNA 1	-1.5607	0.1548
63127	ENSG00000228037		novel transcript	-1.5585	0.0625
63126	ENSG00000188636	RTL6	retrotransposon Gag like 6	-1.5571	0.0050
63125	ENSG00000242325	RPS12P31	ribosomal protein S12 pseudogene 31	-1.5556	0.0970
63124	ENSG00000081721	DUSP12	dual specificity phosphatase 12	-1.5525	0.0116
63123	ENSG00000042429	MED17	mediator complex subunit 17	-1.5502	0.0053
63122	ENSG00000269012	KRT18P40	keratin 18 pseudogene 40	-1.5460	0.0272
63121	ENSG00000282728	PGR-AS1	PGR antisense RNA 1	-1.5432	0.0260
63120	ENSG00000280003		TEC	-1.5425	1.0000
63119	ENSG00000148935	GAS2	growth arrest specific 2	-1.5407	0.0034

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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