Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481548
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481548
Profile download
7010000000000000000000-771
Sequence Read Archive
SRP074598
SRP074598_M21
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
4-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000137575
SDCBP
syndecan binding protein
2.0000
0.0027
2
ENSG00000152443
ZNF776
zinc finger protein 776
2.0000
0.0027
3
ENSG00000207785
MIR500A
microRNA 500a
2.0000
0.0027
4
ENSG00000207970
MIR660
microRNA 660
2.0000
0.0000
5
ENSG00000208015
MIR362
microRNA 362
2.0000
0.0027
6
ENSG00000211538
MIR501
microRNA 501
2.0000
0.0027
7
ENSG00000226989
chromosome 7 open reading frame 44 (C7orf44) pseudogene
2.0000
0.0000
8
ENSG00000239057
MIR500B
microRNA 500b
2.0000
0.0027
9
ENSG00000242256
RN7SL57P
RNA, 7SL, cytoplasmic 57, pseudogene
2.0000
0.0000
10
ENSG00000261077
ribosomal protein L18a (RPL18A) pseudogene
2.0000
0.0027
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000249310
APOBEC3B-AS1
APOBEC3B antisense RNA 1
-1.5607
0.1548
63127
ENSG00000228037
novel transcript
-1.5585
0.0625
63126
ENSG00000188636
RTL6
retrotransposon Gag like 6
-1.5571
0.0050
63125
ENSG00000242325
RPS12P31
ribosomal protein S12 pseudogene 31
-1.5556
0.0970
63124
ENSG00000081721
DUSP12
dual specificity phosphatase 12
-1.5525
0.0116
63123
ENSG00000042429
MED17
mediator complex subunit 17
-1.5502
0.0053
63122
ENSG00000269012
KRT18P40
keratin 18 pseudogene 40
-1.5460
0.0272
63121
ENSG00000282728
PGR-AS1
PGR antisense RNA 1
-1.5432
0.0260
63120
ENSG00000280003
TEC
-1.5425
1.0000
63119
ENSG00000148935
GAS2
growth arrest specific 2
-1.5407
0.0034
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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