Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481548

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481548


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M21Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000137575 SDCBP syndecan binding protein 2.0000 0.0027
2 ENSG00000152443 ZNF776 zinc finger protein 776 2.0000 0.0027
3 ENSG00000207785 MIR500A microRNA 500a 2.0000 0.0027
4 ENSG00000207970 MIR660 microRNA 660 2.0000 0.0000
5 ENSG00000208015 MIR362 microRNA 362 2.0000 0.0027
6 ENSG00000211538 MIR501 microRNA 501 2.0000 0.0027
7 ENSG00000226989 chromosome 7 open reading frame 44 (C7orf44) pseudogene 2.0000 0.0000
8 ENSG00000239057 MIR500B microRNA 500b 2.0000 0.0027
9 ENSG00000242256 RN7SL57P RNA, 7SL, cytoplasmic 57, pseudogene 2.0000 0.0000
10 ENSG00000261077 ribosomal protein L18a (RPL18A) pseudogene 2.0000 0.0027

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000249310 APOBEC3B-AS1 APOBEC3B antisense RNA 1 -1.5607 0.1548
63127 ENSG00000228037 novel transcript -1.5585 0.0625
63126 ENSG00000188636 RTL6 retrotransposon Gag like 6 -1.5571 0.0050
63125 ENSG00000242325 RPS12P31 ribosomal protein S12 pseudogene 31 -1.5556 0.0970
63124 ENSG00000081721 DUSP12 dual specificity phosphatase 12 -1.5525 0.0116
63123 ENSG00000042429 MED17 mediator complex subunit 17 -1.5502 0.0053
63122 ENSG00000269012 KRT18P40 keratin 18 pseudogene 40 -1.5460 0.0272
63121 ENSG00000282728 PGR-AS1 PGR antisense RNA 1 -1.5432 0.0260
63120 ENSG00000280003 TEC -1.5425 1.0000
63119 ENSG00000148935 GAS2 growth arrest specific 2 -1.5407 0.0034

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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