SHOGoiN Cell Methylome: GSM2481548

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481548


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M21Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000137575 SDCBP syndecan binding protein 2.0000 0.0027
2 ENSG00000152443 ZNF776 zinc finger protein 776 2.0000 0.0027
3 ENSG00000207785 MIR500A microRNA 500a 2.0000 0.0027
4 ENSG00000207970 MIR660 microRNA 660 2.0000 0.0000
5 ENSG00000208015 MIR362 microRNA 362 2.0000 0.0027
6 ENSG00000211538 MIR501 microRNA 501 2.0000 0.0027
7 ENSG00000226989 chromosome 7 open reading frame 44 (C7orf44) pseudogene 2.0000 0.0000
8 ENSG00000239057 MIR500B microRNA 500b 2.0000 0.0027
9 ENSG00000242256 RN7SL57P RNA, 7SL, cytoplasmic 57, pseudogene 2.0000 0.0000
10 ENSG00000261077 ribosomal protein L18a (RPL18A) pseudogene 2.0000 0.0027

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000229971 novel transcript -1.5850 1.0000
63340 ENSG00000229937 PRPS1L1 phosphoribosyl pyrophosphate synthetase 1 like 1 -1.5850 1.0000
63339 ENSG00000229899 pseudogene similar to part of the cytochrome c oxidase subunit I (COX1) -1.5850 1.0000
63338 ENSG00000229840 ISCA1P2 iron-sulfur cluster assembly 1 pseudogene 2 -1.5850 1.0000
63337 ENSG00000229733 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene -1.5850 1.0000
63336 ENSG00000229629 transcription elongation factor B (SIII) pseudogene -1.5850 1.0000
63335 ENSG00000229572 EIF4BP4 eukaryotic translation initiation factor 4B pseudogene 4 -1.5850 1.0000
63334 ENSG00000229368 novel transcript, sense overlapping STIM1 -1.5850 1.0000
63332 ENSG00000229225 novel transcript -1.5850 0.6103
10 ENSG00000261077 ribosomal protein L18a (RPL18A) pseudogene 2.0000 0.0027

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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