Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481549

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481549 Profile download	7010000000000000000000-771	Sequence Read Archive	SRP074598	SRP074598_M22	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	4-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000199529	RNU6-462P	RNA, U6 small nuclear 462, pseudogene	3.0000	0.0000
2	ENSG00000273090		novel transcript	2.8617	0.0000
3	ENSG00000233009	NALCN-AS1	NALCN antisense RNA 1	2.8074	0.0000
4	ENSG00000277039		Metazoan signal recognition particle RNA	2.8074	0.0000
5	ENSG00000138814	PPP3CA	protein phosphatase 3 catalytic subunit alpha	2.5850	0.0000
6	ENSG00000199911		Y RNA	2.5850	0.0000
7	ENSG00000204460	LINC01854	long intergenic non-protein coding RNA 1854	2.5850	0.0000
8	ENSG00000230519	HMGB1P49	high mobility group box 1 pseudogene 49	2.5850	0.0000
9	ENSG00000232054	NPM1P34	nucleophosmin 1 pseudogene 34	2.5850	0.0000
10	ENSG00000241409		novel transcript	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000163207	IVL	involucrin	-2.0000	0.6103
63127	ENSG00000162384	CZIB	CXXC motif containing zinc binding protein	-2.0000	0.3843
63126	ENSG00000155099	PIP4P2	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2	-2.0000	0.6103
63125	ENSG00000139223	ANP32D	acidic nuclear phosphoprotein 32 family member D	-2.0000	1.0000
63124	ENSG00000138308	PLA2G12B	phospholipase A2 group XIIB	-2.0000	1.0000
63123	ENSG00000137992	DBT	dihydrolipoamide branched chain transacylase E2	-2.0000	0.1599
63122	ENSG00000137808		novel transcript	-2.0000	0.0666
63121	ENSG00000122188	LAX1	lymphocyte transmembrane adaptor 1	-2.0000	1.0000
63120	ENSG00000117226	GBP3	guanylate binding protein 3	-2.0000	1.0000
63119	ENSG00000116574	RHOU	ras homolog family member U	-2.0000	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...