SHOGoiN Cell Methylome: GSM2481549
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481549 Profile download | 7010000000000000000000-771 | Sequence Read Archive | SRP074598 | SRP074598_M22 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 4-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000199529 | RNU6-462P | RNA, U6 small nuclear 462, pseudogene | 3.0000 | 0.0000 |
| 2 | ENSG00000273090 | novel transcript | 2.8617 | 0.0000 | |
| 3 | ENSG00000233009 | NALCN-AS1 | NALCN antisense RNA 1 | 2.8074 | 0.0000 |
| 4 | ENSG00000277039 | NA | 2.8074 | 0.0000 | |
| 5 | ENSG00000138814 | PPP3CA | protein phosphatase 3 catalytic subunit alpha | 2.5850 | 0.0000 |
| 6 | ENSG00000199911 | NA | 2.5850 | 0.0000 | |
| 7 | ENSG00000204460 | LINC01854 | long intergenic non-protein coding RNA 1854 | 2.5850 | 0.0000 |
| 8 | ENSG00000230519 | HMGB1P49 | high mobility group box 1 pseudogene 49 | 2.5850 | 0.0000 |
| 9 | ENSG00000232054 | NPM1P34 | nucleophosmin 1 pseudogene 34 | 2.5850 | 0.0000 |
| 10 | ENSG00000241409 | novel transcript | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000156976 | EIF4A2 | eukaryotic translation initiation factor 4A2 | -2.0216 | 0.0000 |
| 63340 | ENSG00000275410 | HNF1B | HNF1 homeobox B | -2.0206 | 0.0002 |
| 63339 | ENSG00000047230 | CTPS2 | CTP synthase 2 | -2.0205 | 0.0000 |
| 63338 | ENSG00000176624 | MEX3C | mex-3 RNA binding family member C | -2.0200 | 0.0000 |
| 63337 | ENSG00000164167 | LSM6 | LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated | -2.0195 | 0.0000 |
| 63336 | ENSG00000182634 | OR10G7 | olfactory receptor family 10 subfamily G member 7 | -2.0194 | 0.1026 |
| 63335 | ENSG00000274167 | solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2 (SLC9B2) pseudogene | -2.0191 | 0.0001 | |
| 63334 | ENSG00000231521 | novel transcript | -2.0186 | 0.0000 | |
| 63333 | ENSG00000248527 | MTATP6P1 | MT-ATP6 pseudogene 1 | -2.0185 | 0.0000 |
| 63332 | ENSG00000160410 | SHKBP1 | SH3KBP1 binding protein 1 | -2.0181 | 0.0000 |
