SHOGoiN Cell Methylome: GSM2481549

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481549


Profile download
7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M22Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199529 RNU6-462P RNA, U6 small nuclear 462, pseudogene 3.0000 0.0000
2 ENSG00000273090 novel transcript 2.8617 0.0000
3 ENSG00000233009 NALCN-AS1 NALCN antisense RNA 1 2.8074 0.0000
4 ENSG00000277039 NA 2.8074 0.0000
5 ENSG00000138814 PPP3CA protein phosphatase 3 catalytic subunit alpha 2.5850 0.0000
6 ENSG00000199911 NA 2.5850 0.0000
7 ENSG00000204460 LINC01854 long intergenic non-protein coding RNA 1854 2.5850 0.0000
8 ENSG00000230519 HMGB1P49 high mobility group box 1 pseudogene 49 2.5850 0.0000
9 ENSG00000232054 NPM1P34 nucleophosmin 1 pseudogene 34 2.5850 0.0000
10 ENSG00000241409 novel transcript 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000156976 EIF4A2 eukaryotic translation initiation factor 4A2 -2.0216 0.0000
63340 ENSG00000275410 HNF1B HNF1 homeobox B -2.0206 0.0002
63339 ENSG00000047230 CTPS2 CTP synthase 2 -2.0205 0.0000
63338 ENSG00000176624 MEX3C mex-3 RNA binding family member C -2.0200 0.0000
63337 ENSG00000164167 LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated -2.0195 0.0000
63336 ENSG00000182634 OR10G7 olfactory receptor family 10 subfamily G member 7 -2.0194 0.1026
63335 ENSG00000274167 solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2 (SLC9B2) pseudogene -2.0191 0.0001
63334 ENSG00000231521 novel transcript -2.0186 0.0000
63333 ENSG00000248527 MTATP6P1 MT-ATP6 pseudogene 1 -2.0185 0.0000
63332 ENSG00000160410 SHKBP1 SH3KBP1 binding protein 1 -2.0181 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...