Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2481549
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481549
Profile download
7010000000000000000000-771
Sequence Read Archive
SRP074598
SRP074598_M22
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
4-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000199529
RNU6-462P
RNA, U6 small nuclear 462, pseudogene
3.0000
0.0000
2
ENSG00000273090
novel transcript
2.8617
0.0000
3
ENSG00000233009
NALCN-AS1
NALCN antisense RNA 1
2.8074
0.0000
4
ENSG00000277039
Metazoan signal recognition particle RNA
2.8074
0.0000
5
ENSG00000138814
PPP3CA
protein phosphatase 3 catalytic subunit alpha
2.5850
0.0000
6
ENSG00000199911
Y RNA
2.5850
0.0000
7
ENSG00000204460
LINC01854
long intergenic non-protein coding RNA 1854
2.5850
0.0000
8
ENSG00000230519
HMGB1P49
high mobility group box 1 pseudogene 49
2.5850
0.0000
9
ENSG00000232054
NPM1P34
nucleophosmin 1 pseudogene 34
2.5850
0.0000
10
ENSG00000241409
novel transcript
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000163207
IVL
involucrin
-2.0000
0.6103
63127
ENSG00000162384
CZIB
CXXC motif containing zinc binding protein
-2.0000
0.3843
63126
ENSG00000155099
PIP4P2
phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2
-2.0000
0.6103
63125
ENSG00000139223
ANP32D
acidic nuclear phosphoprotein 32 family member D
-2.0000
1.0000
63124
ENSG00000138308
PLA2G12B
phospholipase A2 group XIIB
-2.0000
1.0000
63123
ENSG00000137992
DBT
dihydrolipoamide branched chain transacylase E2
-2.0000
0.1599
63122
ENSG00000137808
novel transcript
-2.0000
0.0666
63121
ENSG00000122188
LAX1
lymphocyte transmembrane adaptor 1
-2.0000
1.0000
63120
ENSG00000117226
GBP3
guanylate binding protein 3
-2.0000
1.0000
63119
ENSG00000116574
RHOU
ras homolog family member U
-2.0000
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...