Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481549

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481549


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M22Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199529 RNU6-462P RNA, U6 small nuclear 462, pseudogene 3.0000 0.0000
2 ENSG00000273090 novel transcript 2.8617 0.0000
3 ENSG00000233009 NALCN-AS1 NALCN antisense RNA 1 2.8074 0.0000
4 ENSG00000277039 Metazoan signal recognition particle RNA 2.8074 0.0000
5 ENSG00000138814 PPP3CA protein phosphatase 3 catalytic subunit alpha 2.5850 0.0000
6 ENSG00000199911 Y RNA 2.5850 0.0000
7 ENSG00000204460 LINC01854 long intergenic non-protein coding RNA 1854 2.5850 0.0000
8 ENSG00000230519 HMGB1P49 high mobility group box 1 pseudogene 49 2.5850 0.0000
9 ENSG00000232054 NPM1P34 nucleophosmin 1 pseudogene 34 2.5850 0.0000
10 ENSG00000241409 novel transcript 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000163207 IVL involucrin -2.0000 0.6103
63127 ENSG00000162384 CZIB CXXC motif containing zinc binding protein -2.0000 0.3843
63126 ENSG00000155099 PIP4P2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 -2.0000 0.6103
63125 ENSG00000139223 ANP32D acidic nuclear phosphoprotein 32 family member D -2.0000 1.0000
63124 ENSG00000138308 PLA2G12B phospholipase A2 group XIIB -2.0000 1.0000
63123 ENSG00000137992 DBT dihydrolipoamide branched chain transacylase E2 -2.0000 0.1599
63122 ENSG00000137808 novel transcript -2.0000 0.0666
63121 ENSG00000122188 LAX1 lymphocyte transmembrane adaptor 1 -2.0000 1.0000
63120 ENSG00000117226 GBP3 guanylate binding protein 3 -2.0000 1.0000
63119 ENSG00000116574 RHOU ras homolog family member U -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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