SHOGoiN Cell Methylome: GSM2481550
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481550 Profile download | 7010000000000000000000-771 | Sequence Read Archive | SRP074598 | SRP074598_M23 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 4-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000231861 | OR5K2 | olfactory receptor family 5 subfamily K member 2 | 2.9037 | 0.0000 |
| 2 | ENSG00000214978 | GSG1L2 | GSG1 like 2 | 2.5850 | 0.0000 |
| 3 | ENSG00000226089 | novel transcript, sense intronic to FAM46A | 2.5850 | 0.0000 | |
| 4 | ENSG00000231601 | novel transcript | 2.5850 | 0.0000 | |
| 5 | ENSG00000235020 | novel transcript | 2.5850 | 0.0000 | |
| 6 | ENSG00000242428 | C3orf67-AS1 | C3orf67 antisense RNA 1 | 2.5850 | 0.0000 |
| 8 | ENSG00000270852 | novel pseudogene | 2.5850 | 0.0000 | |
| 9 | ENSG00000272563 | novel transcript | 2.5850 | 0.0000 | |
| 10 | ENSG00000273784 | novel transcript | 2.5850 | 0.0000 | |
| 63332 | ENSG00000251487 | novel transcript | -2.0000 | 1.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000253665 | novel transcript | -2.0000 | 1.0000 | |
| 63340 | ENSG00000253631 | IGLV7-35 | immunoglobulin lambda variable 7-35 (pseudogene) | -2.0000 | 1.0000 |
| 63339 | ENSG00000253580 | TRMT10BP1 | tRNA methyltransferase 10B pseudogene 1 | -2.0000 | 1.0000 |
| 63338 | ENSG00000253149 | IGHVII-28-1 | immunoglobulin heavy variable (II)-28-1 (pseudogene) | -2.0000 | 1.0000 |
| 63337 | ENSG00000253127 | IGKV2D-36 | immunoglobulin kappa variable 2D-36 (pseudogene) | -2.0000 | 0.4009 |
| 63336 | ENSG00000253003 | RNU6-1261P | RNA, U6 small nuclear 1261, pseudogene | -2.0000 | 0.3835 |
| 63335 | ENSG00000252983 | RNU7-35P | RNA, U7 small nuclear 35 pseudogene | -2.0000 | 1.0000 |
| 63334 | ENSG00000252729 | RNU6-971P | RNA, U6 small nuclear 971, pseudogene | -2.0000 | 1.0000 |
| 63333 | ENSG00000252206 | RNU7-40P | RNA, U7 small nuclear 40 pseudogene | -2.0000 | 1.0000 |
| 63332 | ENSG00000251487 | novel transcript | -2.0000 | 1.0000 |
