SHOGoiN Cell Methylome: GSM2481550

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481550


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M23Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231861 OR5K2 olfactory receptor family 5 subfamily K member 2 2.9037 0.0000
2 ENSG00000214978 GSG1L2 GSG1 like 2 2.5850 0.0000
3 ENSG00000226089 novel transcript, sense intronic to FAM46A 2.5850 0.0000
4 ENSG00000231601 novel transcript 2.5850 0.0000
5 ENSG00000235020 novel transcript 2.5850 0.0000
6 ENSG00000242428 C3orf67-AS1 C3orf67 antisense RNA 1 2.5850 0.0000
8 ENSG00000270852 novel pseudogene 2.5850 0.0000
9 ENSG00000272563 novel transcript 2.5850 0.0000
10 ENSG00000273784 novel transcript 2.5850 0.0000
63332 ENSG00000251487 novel transcript -2.0000 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000253665 novel transcript -2.0000 1.0000
63340 ENSG00000253631 IGLV7-35 immunoglobulin lambda variable 7-35 (pseudogene) -2.0000 1.0000
63339 ENSG00000253580 TRMT10BP1 tRNA methyltransferase 10B pseudogene 1 -2.0000 1.0000
63338 ENSG00000253149 IGHVII-28-1 immunoglobulin heavy variable (II)-28-1 (pseudogene) -2.0000 1.0000
63337 ENSG00000253127 IGKV2D-36 immunoglobulin kappa variable 2D-36 (pseudogene) -2.0000 0.4009
63336 ENSG00000253003 RNU6-1261P RNA, U6 small nuclear 1261, pseudogene -2.0000 0.3835
63335 ENSG00000252983 RNU7-35P RNA, U7 small nuclear 35 pseudogene -2.0000 1.0000
63334 ENSG00000252729 RNU6-971P RNA, U6 small nuclear 971, pseudogene -2.0000 1.0000
63333 ENSG00000252206 RNU7-40P RNA, U7 small nuclear 40 pseudogene -2.0000 1.0000
63332 ENSG00000251487 novel transcript -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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