Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481550

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481550


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M23Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231861 OR5K2 olfactory receptor family 5 subfamily K member 2 2.9037 0.0000
2 ENSG00000214978 GSG1L2 GSG1 like 2 2.5850 0.0000
3 ENSG00000226089 novel transcript, sense intronic to FAM46A 2.5850 0.0000
4 ENSG00000231601 novel transcript 2.5850 0.0000
5 ENSG00000235020 novel transcript 2.5850 0.0000
6 ENSG00000242428 CFAP20DC-AS1 CFAP20DC antisense RNA 1 2.5850 0.0000
8 ENSG00000270852 novel pseudogene 2.5850 0.0000
9 ENSG00000272563 novel transcript 2.5850 0.0000
10 ENSG00000273784 novel transcript 2.5850 0.0000
63119 ENSG00000204183 GDF5-AS1 GDF5 antisense RNA 1 -1.9690 0.6103

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000233328 PFN1P1 profilin 1 pseudogene 1 -1.9741 0.0085
63127 ENSG00000223901 novel transcript -1.9734 0.0000
63126 ENSG00000284252 MIR4444-1 microRNA 4444-1 -1.9724 0.1053
63125 ENSG00000229337 novel transcript -1.9724 0.1053
63124 ENSG00000267669 ribosomal protein, large, P0 pseudogene -1.9723 0.0433
63123 ENSG00000214439 FAM185BP family with sequence similarity 185 member B, pseudogene -1.9702 0.0002
63122 ENSG00000280180 novel transcript -1.9700 0.0000
63121 ENSG00000244242 IFITM10 interferon induced transmembrane protein 10 -1.9698 0.0000
63120 ENSG00000233158 RPS24P6 ribosomal protein S24 pseudogene 6 -1.9690 0.6103
63119 ENSG00000204183 GDF5-AS1 GDF5 antisense RNA 1 -1.9690 0.6103

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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