Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2481550
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481550
Profile download
7010000000000000000000-771
Sequence Read Archive
SRP074598
SRP074598_M23
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
4-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000231861
OR5K2
olfactory receptor family 5 subfamily K member 2
2.9037
0.0000
2
ENSG00000214978
GSG1L2
GSG1 like 2
2.5850
0.0000
3
ENSG00000226089
novel transcript, sense intronic to FAM46A
2.5850
0.0000
4
ENSG00000231601
novel transcript
2.5850
0.0000
5
ENSG00000235020
novel transcript
2.5850
0.0000
6
ENSG00000242428
CFAP20DC-AS1
CFAP20DC antisense RNA 1
2.5850
0.0000
8
ENSG00000270852
novel pseudogene
2.5850
0.0000
9
ENSG00000272563
novel transcript
2.5850
0.0000
10
ENSG00000273784
novel transcript
2.5850
0.0000
63119
ENSG00000204183
GDF5-AS1
GDF5 antisense RNA 1
-1.9690
0.6103
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000233328
PFN1P1
profilin 1 pseudogene 1
-1.9741
0.0085
63127
ENSG00000223901
novel transcript
-1.9734
0.0000
63126
ENSG00000284252
MIR4444-1
microRNA 4444-1
-1.9724
0.1053
63125
ENSG00000229337
novel transcript
-1.9724
0.1053
63124
ENSG00000267669
ribosomal protein, large, P0 pseudogene
-1.9723
0.0433
63123
ENSG00000214439
FAM185BP
family with sequence similarity 185 member B, pseudogene
-1.9702
0.0002
63122
ENSG00000280180
novel transcript
-1.9700
0.0000
63121
ENSG00000244242
IFITM10
interferon induced transmembrane protein 10
-1.9698
0.0000
63120
ENSG00000233158
RPS24P6
ribosomal protein S24 pseudogene 6
-1.9690
0.6103
63119
ENSG00000204183
GDF5-AS1
GDF5 antisense RNA 1
-1.9690
0.6103
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...
