Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481551

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481551 Profile download	7010000000000000000000-771	Sequence Read Archive	SRP074598	SRP074598_M24	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	4-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000278480	ZBTB2P1	ZBTB2 pseudogene 1	3.0000	0.0000
2	ENSG00000226783	TLK1P1	tousled like kinase 1 pseudogene 1	2.3219	0.0007
3	ENSG00000133636	NTS	neurotensin	2.0000	0.0044
4	ENSG00000203864	LINC02868	long intergenic non-protein coding RNA 2868	2.0000	0.0044
5	ENSG00000211706	TRBV6-1	T cell receptor beta variable 6-1	2.0000	0.0044
6	ENSG00000230376	MEMO1P4	mediator of cell motility 1 pseudogene 4	2.0000	0.0000
7	ENSG00000230948	AURKBP1	aurora kinase B pseudogene 1	2.0000	0.0044
8	ENSG00000235386		pseudogene similar to part of microfibrillar-associated protein 2 (MFAP2)	2.0000	0.0044
9	ENSG00000236187	GJA6P	gap junction protein alpha 6, pseudogene	2.0000	0.0044
10	ENSG00000241744		ribosomal protein S6 (RPS6) pseudogene	2.0000	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000101892	ATP1B4	ATPase Na+/K+ transporting family member beta 4	-1.5850	1.0000
63127	ENSG00000101417	PXMP4	peroxisomal membrane protein 4	-1.5850	1.0000
63126	ENSG00000100448	CTSG	cathepsin G	-1.5850	0.0921
63125	ENSG00000091844	RGS17	regulator of G protein signaling 17	-1.5850	0.0017
63124	ENSG00000086300	SNX10	sorting nexin 10	-1.5850	1.0000
63123	ENSG00000085365	SCAMP1	secretory carrier membrane protein 1	-1.5850	1.0000
63122	ENSG00000082515	MRPL22	mitochondrial ribosomal protein L22	-1.5850	0.2360
63121	ENSG00000075945	KIFAP3	kinesin associated protein 3	-1.5850	0.0921
63120	ENSG00000068971	PPP2R5B	protein phosphatase 2 regulatory subunit B'beta	-1.5850	0.2360
63119	ENSG00000005471	ABCB4	ATP binding cassette subfamily B member 4	-1.5850	0.3840

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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