Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481551

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481551


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M24Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000278480 ZBTB2P1 ZBTB2 pseudogene 1 3.0000 0.0000
2 ENSG00000226783 TLK1P1 tousled like kinase 1 pseudogene 1 2.3219 0.0007
3 ENSG00000133636 NTS neurotensin 2.0000 0.0044
4 ENSG00000203864 LINC02868 long intergenic non-protein coding RNA 2868 2.0000 0.0044
5 ENSG00000211706 TRBV6-1 T cell receptor beta variable 6-1 2.0000 0.0044
6 ENSG00000230376 MEMO1P4 mediator of cell motility 1 pseudogene 4 2.0000 0.0000
7 ENSG00000230948 AURKBP1 aurora kinase B pseudogene 1 2.0000 0.0044
8 ENSG00000235386 pseudogene similar to part of microfibrillar-associated protein 2 (MFAP2) 2.0000 0.0044
9 ENSG00000236187 GJA6P gap junction protein alpha 6, pseudogene 2.0000 0.0044
10 ENSG00000241744 ribosomal protein S6 (RPS6) pseudogene 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000101892 ATP1B4 ATPase Na+/K+ transporting family member beta 4 -1.5850 1.0000
63127 ENSG00000101417 PXMP4 peroxisomal membrane protein 4 -1.5850 1.0000
63126 ENSG00000100448 CTSG cathepsin G -1.5850 0.0921
63125 ENSG00000091844 RGS17 regulator of G protein signaling 17 -1.5850 0.0017
63124 ENSG00000086300 SNX10 sorting nexin 10 -1.5850 1.0000
63123 ENSG00000085365 SCAMP1 secretory carrier membrane protein 1 -1.5850 1.0000
63122 ENSG00000082515 MRPL22 mitochondrial ribosomal protein L22 -1.5850 0.2360
63121 ENSG00000075945 KIFAP3 kinesin associated protein 3 -1.5850 0.0921
63120 ENSG00000068971 PPP2R5B protein phosphatase 2 regulatory subunit B'beta -1.5850 0.2360
63119 ENSG00000005471 ABCB4 ATP binding cassette subfamily B member 4 -1.5850 0.3840

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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