SHOGoiN Cell Methylome: GSM2481551
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481551 Profile download | 7010000000000000000000-771 | Sequence Read Archive | SRP074598 | SRP074598_M24 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 4-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000278480 | zinc finger and BTB domain containing 2 (ZBTB2) pseudogene | 3.0000 | 0.0000 | |
| 2 | ENSG00000226783 | TLK1P1 | tousled like kinase 1 pseudogene 1 | 2.3219 | 0.0007 |
| 3 | ENSG00000133636 | NTS | neurotensin | 2.0000 | 0.0044 |
| 4 | ENSG00000203864 | C1orf137 | chromosome 1 open reading frame 137 (putative) | 2.0000 | 0.0044 |
| 5 | ENSG00000211706 | TRBV6-1 | T cell receptor beta variable 6-1 | 2.0000 | 0.0044 |
| 6 | ENSG00000230376 | MEMO1P4 | mediator of cell motility 1 pseudogene 4 | 2.0000 | 0.0000 |
| 7 | ENSG00000230948 | aurora kinase B (AURKB) pseudogene | 2.0000 | 0.0044 | |
| 8 | ENSG00000235386 | pseudogene similar to part of microfibrillar-associated protein 2 (MFAP2) | 2.0000 | 0.0044 | |
| 9 | ENSG00000236187 | GJA6P | gap junction protein alpha 6, pseudogene | 2.0000 | 0.0044 |
| 10 | ENSG00000241744 | ribosomal protein S6 (RPS6) pseudogene | 2.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000242671 | LINC02010 | long intergenic non-protein coding RNA 2010 | -1.5850 | 0.5982 |
| 63340 | ENSG00000242372 | EIF6 | eukaryotic translation initiation factor 6 | -1.5850 | 1.0000 |
| 63339 | ENSG00000242236 | RN7SL594P | RNA, 7SL, cytoplasmic 594, pseudogene | -1.5850 | 1.0000 |
| 63338 | ENSG00000242158 | RN7SL361P | RNA, 7SL, cytoplasmic 361, pseudogene | -1.5850 | 0.5982 |
| 63337 | ENSG00000241621 | GOLGA2P6 | GOLGA2 pseudogene 6 | -1.5850 | 1.0000 |
| 63336 | ENSG00000241588 | RN7SL484P | RNA, 7SL, cytoplasmic 484, pseudogene | -1.5850 | 1.0000 |
| 63335 | ENSG00000240951 | MTCO2P6 | MT-CO2 pseudogene 6 | -1.5850 | 1.0000 |
| 63334 | ENSG00000240863 | RN7SL645P | RNA, 7SL, cytoplasmic 645, pseudogene | -1.5850 | 0.3685 |
| 63333 | ENSG00000240859 | novel transcript | -1.5850 | 0.2360 | |
| 63332 | ENSG00000240309 | MTCO1P6 | MT-CO1 pseudogene 6 | -1.5850 | 1.0000 |
