Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
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Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481551
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481551
Profile download
7010000000000000000000-771
Sequence Read Archive
SRP074598
SRP074598_M24
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
4-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000278480
ZBTB2P1
ZBTB2 pseudogene 1
3.0000
0.0000
2
ENSG00000226783
TLK1P1
tousled like kinase 1 pseudogene 1
2.3219
0.0007
3
ENSG00000133636
NTS
neurotensin
2.0000
0.0044
4
ENSG00000203864
LINC02868
long intergenic non-protein coding RNA 2868
2.0000
0.0044
5
ENSG00000211706
TRBV6-1
T cell receptor beta variable 6-1
2.0000
0.0044
6
ENSG00000230376
MEMO1P4
mediator of cell motility 1 pseudogene 4
2.0000
0.0000
7
ENSG00000230948
AURKBP1
aurora kinase B pseudogene 1
2.0000
0.0044
8
ENSG00000235386
pseudogene similar to part of microfibrillar-associated protein 2 (MFAP2)
2.0000
0.0044
9
ENSG00000236187
GJA6P
gap junction protein alpha 6, pseudogene
2.0000
0.0044
10
ENSG00000241744
ribosomal protein S6 (RPS6) pseudogene
2.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000101892
ATP1B4
ATPase Na+/K+ transporting family member beta 4
-1.5850
1.0000
63127
ENSG00000101417
PXMP4
peroxisomal membrane protein 4
-1.5850
1.0000
63126
ENSG00000100448
CTSG
cathepsin G
-1.5850
0.0921
63125
ENSG00000091844
RGS17
regulator of G protein signaling 17
-1.5850
0.0017
63124
ENSG00000086300
SNX10
sorting nexin 10
-1.5850
1.0000
63123
ENSG00000085365
SCAMP1
secretory carrier membrane protein 1
-1.5850
1.0000
63122
ENSG00000082515
MRPL22
mitochondrial ribosomal protein L22
-1.5850
0.2360
63121
ENSG00000075945
KIFAP3
kinesin associated protein 3
-1.5850
0.0921
63120
ENSG00000068971
PPP2R5B
protein phosphatase 2 regulatory subunit B'beta
-1.5850
0.2360
63119
ENSG00000005471
ABCB4
ATP binding cassette subfamily B member 4
-1.5850
0.3840
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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