SHOGoiN Cell Methylome: GSM2481552

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481552


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M25Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206998 NA 2.8074 0.0000
2 ENSG00000264371 MIR4425 microRNA 4425 2.3219 0.0000
3 ENSG00000205097 FRG2 FSHD region gene 2 2.1380 0.0000
4 ENSG00000224807 DUX4L9 double homeobox 4 like 9 (pseudogene) 2.1380 0.0000
5 ENSG00000152413 HOMER1 homer scaffold protein 1 2.0000 0.0049
6 ENSG00000201659 RNU12-2P RNA, U12 small nuclear 2, pseudogene 2.0000 0.0049
7 ENSG00000263870 RAP1A, member of RAS oncogene family (RAP1A) pseudogene 2.0000 0.0000
8 ENSG00000270624 ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) pseudogene 2.0000 0.0000
9 ENSG00000278589 ZACNP1 zinc activated ion channel pseudogene 1 2.0000 0.0049
10 ENSG00000136770 DNAJC1 DnaJ heat shock protein family (Hsp40) member C1 1.8814 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000230079 STK24P1 serine/threonine kinase 24 pseudogene 1 -1.5850 1.0000
63340 ENSG00000229940 TSPY22P testis specific protein Y-linked 22, pseudogene -1.5850 1.0000
63339 ENSG00000229821 novel transcript -1.5850 0.3665
63338 ENSG00000229605 RPL21P93 ribosomal protein L21 pseudogene 93 -1.5850 0.2296
63337 ENSG00000229508 PHKG1P4 phosphorylase kinase catalytic subunit gamma 1 pseudogene 4 -1.5850 1.0000
63336 ENSG00000229214 LINC00242 long intergenic non-protein coding RNA 242 -1.5850 1.0000
63335 ENSG00000229153 EPHA1-AS1 EPHA1 antisense RNA 1 -1.5850 0.2296
63334 ENSG00000229043 novel transcript -1.5850 0.3665
63333 ENSG00000228983 SLC47A1P1 SLC47A1 pseudogene 1 -1.5850 1.0000
63332 ENSG00000228857 novel transcript -1.5850 0.2390

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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