SHOGoiN Cell Methylome: GSM2481553

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481553


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7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M26Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000237510 GPAT2P1 glycerol-3-phosphate acyltransferase 2 pseudogene 1 2.5850 0.0000
2 ENSG00000266692 NA 2.5615 0.0000
3 ENSG00000230071 RPL4P6 ribosomal protein L4 pseudogene 6 2.3219 0.0000
4 ENSG00000232518 novel transcript 2.3219 0.0000
5 ENSG00000235940 MTND1P21 MT-ND1 pseudogene 21 2.3219 0.0025
6 ENSG00000243055 GK-AS1 GK antisense RNA 1 2.3219 0.0025
7 ENSG00000244372 RN7SL423P RNA, 7SL, cytoplasmic 423, pseudogene 2.3219 0.0000
8 ENSG00000248282 MTCYBP44 MT-CYB pseudogene 44 2.3219 0.0000
9 ENSG00000254864 novel transcript 2.3219 0.0025
10 ENSG00000257074 RPL29P33 ribosomal protein L29 pseudogene 33 2.3219 0.0025

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000033867 SLC4A7 solute carrier family 4 member 7 -1.6523 0.0000
63340 ENSG00000258724 PINX1 PIN2 (TERF1) interacting telomerase inhibitor 1 -1.6520 0.0000
63339 ENSG00000249637 novel transcript -1.6507 0.0000
63338 ENSG00000164611 PTTG1 PTTG1 regulator of sister chromatid separation, securin -1.6503 0.0003
63337 ENSG00000140675 SLC5A2 solute carrier family 5 member 2 -1.6503 0.0000
63336 ENSG00000271937 novel transcript, antisense to TCAIM -1.6498 0.0003
63335 ENSG00000225975 LINC01534 long intergenic non-protein coding RNA 1534 -1.6496 0.0000
63334 ENSG00000138136 LBX1 ladybird homeobox 1 -1.6492 0.0000
63333 ENSG00000069345 DNAJA2 DnaJ heat shock protein family (Hsp40) member A2 -1.6484 0.0000
63332 ENSG00000257883 novel transcript -1.6477 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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