SHOGoiN Cell Methylome: GSM2481554

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481554


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M27Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000271833 novel transcript 3.0000 0.0000
2 ENSG00000114446 IFT57 intraflagellar transport 57 2.3219 0.0019
3 ENSG00000137501 SYTL2 synaptotagmin like 2 2.3219 0.0000
4 ENSG00000143033 MTF2 metal response element binding transcription factor 2 2.3219 0.0000
5 ENSG00000230300 STARD13-IT1 STARD13 intronic transcript 1 2.3219 0.0019
6 ENSG00000252498 RNU6-1016P RNA, U6 small nuclear 1016, pseudogene 2.3219 0.0019
7 ENSG00000275268 NA 2.3219 0.0019
8 ENSG00000280092 novel transcript 2.3219 0.0000
9 ENSG00000226625 RBM17P1 RNA binding motif protein 17 pseudogene 1 2.2549 0.0000
10 ENSG00000265694 MIR4774 microRNA 4774 2.2146 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000274164 RNA5SP439 RNA, 5S ribosomal pseudogene 439 -1.5850 0.2181
63340 ENSG00000273972 novel transcript -1.5850 1.0000
63339 ENSG00000273820 USP27X ubiquitin specific peptidase 27 X-linked -1.5850 0.0128
63338 ENSG00000273611 ZNHIT3 zinc finger HIT-type containing 3 -1.5850 0.2181
63336 ENSG00000273348 novel transcript -1.5850 0.1350
63335 ENSG00000273213 histone cluster 2 H3 pseudogene 2 -1.5850 0.0032
63334 ENSG00000273209 novel transcript -1.5850 1.0000
63333 ENSG00000273069 novel transcript -1.5850 0.3551
63332 ENSG00000272948 novel transcript, antisense to DSCR3 -1.5850 0.0003
10 ENSG00000265694 MIR4774 microRNA 4774 2.2146 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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