Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481554

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481554 Profile download	7010000000000000000000-769	Sequence Read Archive	SRP074598	SRP074598_M27	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Zygote	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000271833		novel transcript	3.0000	0.0000
2	ENSG00000114446	IFT57	intraflagellar transport 57	2.3219	0.0019
3	ENSG00000137501	SYTL2	synaptotagmin like 2	2.3219	0.0000
4	ENSG00000143033	MTF2	metal response element binding transcription factor 2	2.3219	0.0000
5	ENSG00000230300	STARD13-IT1	STARD13 intronic transcript 1	2.3219	0.0019
6	ENSG00000252498	RNU6-1016P	RNA, U6 small nuclear 1016, pseudogene	2.3219	0.0019
7	ENSG00000275268		U7 small nuclear RNA	2.3219	0.0019
8	ENSG00000280092		novel transcript	2.3219	0.0000
9	ENSG00000226625	RBM17P1	RNA binding motif protein 17 pseudogene 1	2.2549	0.0000
10	ENSG00000265694	MIR4774	microRNA 4774	2.2146	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000248426		ankyrin repeat domain 11 (ANKRD11) pseudogene	-1.5850	0.0001
63127	ENSG00000248391	LINC02064	long intergenic non-protein coding RNA 2064	-1.5850	0.5862
63126	ENSG00000248236		Centromere protein O (CENP-O) pseudogene	-1.5850	1.0000
63125	ENSG00000248223		novel transcript	-1.5850	1.0000
63124	ENSG00000248019	FAM13A-AS1	FAM13A antisense RNA 1	-1.5850	1.0000
63123	ENSG00000247982	LINC00926	long intergenic non-protein coding RNA 926	-1.5850	0.5862
63122	ENSG00000244621	RPS17P11	ribosomal protein S17 pseudogene 11	-1.5850	1.0000
63121	ENSG00000244617	ASPRV1	aspartic peptidase retroviral like 1	-1.5850	0.5862
63120	ENSG00000244456	SPECC1P2	SPECC1 pseudogene 2	-1.5850	0.3551
63119	ENSG00000244265	SIAH2-AS1	SIAH2 antisense RNA 1	-1.5850	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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