SHOGoiN Cell Methylome: GSM2481554
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481554 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP074598 | SRP074598_M27 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Zygote | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000271833 | novel transcript | 3.0000 | 0.0000 | |
| 2 | ENSG00000114446 | IFT57 | intraflagellar transport 57 | 2.3219 | 0.0019 |
| 3 | ENSG00000137501 | SYTL2 | synaptotagmin like 2 | 2.3219 | 0.0000 |
| 4 | ENSG00000143033 | MTF2 | metal response element binding transcription factor 2 | 2.3219 | 0.0000 |
| 5 | ENSG00000230300 | STARD13-IT1 | STARD13 intronic transcript 1 | 2.3219 | 0.0019 |
| 6 | ENSG00000252498 | RNU6-1016P | RNA, U6 small nuclear 1016, pseudogene | 2.3219 | 0.0019 |
| 7 | ENSG00000275268 | NA | 2.3219 | 0.0019 | |
| 8 | ENSG00000280092 | novel transcript | 2.3219 | 0.0000 | |
| 9 | ENSG00000226625 | RBM17P1 | RNA binding motif protein 17 pseudogene 1 | 2.2549 | 0.0000 |
| 10 | ENSG00000265694 | MIR4774 | microRNA 4774 | 2.2146 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000274164 | RNA5SP439 | RNA, 5S ribosomal pseudogene 439 | -1.5850 | 0.2181 |
| 63340 | ENSG00000273972 | novel transcript | -1.5850 | 1.0000 | |
| 63339 | ENSG00000273820 | USP27X | ubiquitin specific peptidase 27 X-linked | -1.5850 | 0.0128 |
| 63338 | ENSG00000273611 | ZNHIT3 | zinc finger HIT-type containing 3 | -1.5850 | 0.2181 |
| 63336 | ENSG00000273348 | novel transcript | -1.5850 | 0.1350 | |
| 63335 | ENSG00000273213 | histone cluster 2 H3 pseudogene 2 | -1.5850 | 0.0032 | |
| 63334 | ENSG00000273209 | novel transcript | -1.5850 | 1.0000 | |
| 63333 | ENSG00000273069 | novel transcript | -1.5850 | 0.3551 | |
| 63332 | ENSG00000272948 | novel transcript, antisense to DSCR3 | -1.5850 | 0.0003 | |
| 10 | ENSG00000265694 | MIR4774 | microRNA 4774 | 2.2146 | 0.0000 |
