Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481554

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481554


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M27Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000271833 novel transcript 3.0000 0.0000
2 ENSG00000114446 IFT57 intraflagellar transport 57 2.3219 0.0019
3 ENSG00000137501 SYTL2 synaptotagmin like 2 2.3219 0.0000
4 ENSG00000143033 MTF2 metal response element binding transcription factor 2 2.3219 0.0000
5 ENSG00000230300 STARD13-IT1 STARD13 intronic transcript 1 2.3219 0.0019
6 ENSG00000252498 RNU6-1016P RNA, U6 small nuclear 1016, pseudogene 2.3219 0.0019
7 ENSG00000275268 U7 small nuclear RNA 2.3219 0.0019
8 ENSG00000280092 novel transcript 2.3219 0.0000
9 ENSG00000226625 RBM17P1 RNA binding motif protein 17 pseudogene 1 2.2549 0.0000
10 ENSG00000265694 MIR4774 microRNA 4774 2.2146 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000248426 ankyrin repeat domain 11 (ANKRD11) pseudogene -1.5850 0.0001
63127 ENSG00000248391 LINC02064 long intergenic non-protein coding RNA 2064 -1.5850 0.5862
63126 ENSG00000248236 Centromere protein O (CENP-O) pseudogene -1.5850 1.0000
63125 ENSG00000248223 novel transcript -1.5850 1.0000
63124 ENSG00000248019 FAM13A-AS1 FAM13A antisense RNA 1 -1.5850 1.0000
63123 ENSG00000247982 LINC00926 long intergenic non-protein coding RNA 926 -1.5850 0.5862
63122 ENSG00000244621 RPS17P11 ribosomal protein S17 pseudogene 11 -1.5850 1.0000
63121 ENSG00000244617 ASPRV1 aspartic peptidase retroviral like 1 -1.5850 0.5862
63120 ENSG00000244456 SPECC1P2 SPECC1 pseudogene 2 -1.5850 0.3551
63119 ENSG00000244265 SIAH2-AS1 SIAH2 antisense RNA 1 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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