Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481554
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481554
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP074598
SRP074598_M27
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Zygote
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000271833
novel transcript
3.0000
0.0000
2
ENSG00000114446
IFT57
intraflagellar transport 57
2.3219
0.0019
3
ENSG00000137501
SYTL2
synaptotagmin like 2
2.3219
0.0000
4
ENSG00000143033
MTF2
metal response element binding transcription factor 2
2.3219
0.0000
5
ENSG00000230300
STARD13-IT1
STARD13 intronic transcript 1
2.3219
0.0019
6
ENSG00000252498
RNU6-1016P
RNA, U6 small nuclear 1016, pseudogene
2.3219
0.0019
7
ENSG00000275268
U7 small nuclear RNA
2.3219
0.0019
8
ENSG00000280092
novel transcript
2.3219
0.0000
9
ENSG00000226625
RBM17P1
RNA binding motif protein 17 pseudogene 1
2.2549
0.0000
10
ENSG00000265694
MIR4774
microRNA 4774
2.2146
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000248426
ankyrin repeat domain 11 (ANKRD11) pseudogene
-1.5850
0.0001
63127
ENSG00000248391
LINC02064
long intergenic non-protein coding RNA 2064
-1.5850
0.5862
63126
ENSG00000248236
Centromere protein O (CENP-O) pseudogene
-1.5850
1.0000
63125
ENSG00000248223
novel transcript
-1.5850
1.0000
63124
ENSG00000248019
FAM13A-AS1
FAM13A antisense RNA 1
-1.5850
1.0000
63123
ENSG00000247982
LINC00926
long intergenic non-protein coding RNA 926
-1.5850
0.5862
63122
ENSG00000244621
RPS17P11
ribosomal protein S17 pseudogene 11
-1.5850
1.0000
63121
ENSG00000244617
ASPRV1
aspartic peptidase retroviral like 1
-1.5850
0.5862
63120
ENSG00000244456
SPECC1P2
SPECC1 pseudogene 2
-1.5850
0.3551
63119
ENSG00000244265
SIAH2-AS1
SIAH2 antisense RNA 1
-1.5850
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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