SHOGoiN Cell Methylome: GSM2481555
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481555 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP074598 | SRP074598_M28 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Zygote | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000233363 | novel transcript | 2.8074 | 0.0000 | |
| 2 | ENSG00000243593 | LINC02049 | long intergenic non-protein coding RNA 2049 | 2.5850 | 0.0000 |
| 3 | ENSG00000248133 | MTND4LP22 | MT-ND4L pseudogene 22 | 2.5850 | 0.0000 |
| 4 | ENSG00000248654 | MTCO3P44 | MT-CO3 pseudogene 44 | 2.5850 | 0.0000 |
| 5 | ENSG00000250050 | MTND4P9 | MT-ND4 pseudogene 9 | 2.5850 | 0.0000 |
| 6 | ENSG00000251353 | MTND3P5 | MT-ND3 pseudogene 5 | 2.5850 | 0.0000 |
| 7 | ENSG00000202478 | RNU6-81P | RNA, U6 small nuclear 81, pseudogene | 2.3219 | 0.0000 |
| 8 | ENSG00000214313 | AZGP1P1 | AZGP1 pseudogene 1 | 2.3219 | 0.0000 |
| 9 | ENSG00000215032 | GNL3LP1 | G protein nucleolar 3 like pseudogene 1 | 2.3219 | 0.0000 |
| 10 | ENSG00000226722 | LINC00424 | long intergenic non-protein coding RNA 424 | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000226627 | SHANK2-AS1 | SHANK2 antisense RNA 1 | -1.6148 | 0.2699 |
| 63340 | ENSG00000160013 | PTGIR | prostaglandin I2 receptor | -1.6147 | 1.0000 |
| 63339 | ENSG00000136274 | NACAD | NAC alpha domain containing | -1.6147 | 0.0010 |
| 63338 | ENSG00000267634 | RPL7L1P5 | ribosomal protein L7 like 1 pseudogene 5 | -1.6136 | 0.6649 |
| 63337 | ENSG00000278932 | novel transcript | -1.6133 | 0.1842 | |
| 63336 | ENSG00000004864 | SLC25A13 | solute carrier family 25 member 13 | -1.6132 | 0.5090 |
| 63335 | ENSG00000092330 | TERF1 interacting nuclear factor 2 | -1.6126 | 0.1783 | |
| 63334 | ENSG00000139116 | KIF21A | kinesin family member 21A | -1.6119 | 0.3865 |
| 63333 | ENSG00000196659 | TTC30B | tetratricopeptide repeat domain 30B | -1.6085 | 0.4066 |
| 63332 | ENSG00000188306 | LRRIQ4 | leucine rich repeats and IQ motif containing 4 | -1.6073 | 1.0000 |
