Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481555

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481555 Profile download	7010000000000000000000-769	Sequence Read Archive	SRP074598	SRP074598_M28	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Zygote	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000233363		novel transcript	2.8074	0.0000
2	ENSG00000243593	LINC02049	long intergenic non-protein coding RNA 2049	2.5850	0.0000
3	ENSG00000248133	MTND4LP22	MT-ND4L pseudogene 22	2.5850	0.0000
4	ENSG00000248654	MTCO3P44	MT-CO3 pseudogene 44	2.5850	0.0000
5	ENSG00000250050	MTND4P9	MT-ND4 pseudogene 9	2.5850	0.0000
6	ENSG00000251353	MTND3P5	MT-ND3 pseudogene 5	2.5850	0.0000
7	ENSG00000202478	RNU6-81P	RNA, U6 small nuclear 81, pseudogene	2.3219	0.0000
8	ENSG00000214313	AZGP1P1	AZGP1 pseudogene 1	2.3219	0.0000
9	ENSG00000215032	GNL3LP1	G protein nucleolar 3 like pseudogene 1	2.3219	0.0000
10	ENSG00000226722	LINC00424	long intergenic non-protein coding RNA 424	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000259084		novel transcript	-1.5850	1.0000
63127	ENSG00000259053		novel transcript	-1.5850	1.0000
63126	ENSG00000259041		novel transcript	-1.5850	1.0000
63125	ENSG00000258870	EIF4EBP1P1	eukaryotic translation initiation factor 4E binding protein 1 pseudogene 1	-1.5850	1.0000
63124	ENSG00000258866		novel transcript	-1.5850	1.0000
63123	ENSG00000258678	LINC02317	long intergenic non-protein coding RNA 2317	-1.5850	1.0000
63122	ENSG00000258566		H1 histone family, member O, oocyte-specific (H1FOO) pseudogene	-1.5850	1.0000
63121	ENSG00000258529		novel protein	-1.5850	0.4066
63120	ENSG00000258448		required for meiotic nuclear division 1 homolog (S. cerevisiae) (RMND1) pseudogene	-1.5850	1.0000
63119	ENSG00000258378		novel transcript, antisense to TIMM9	-1.5850	0.4202

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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