SHOGoiN Cell Methylome: GSM2481555

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481555


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M28Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000233363 novel transcript 2.8074 0.0000
2 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5850 0.0000
3 ENSG00000248133 MTND4LP22 MT-ND4L pseudogene 22 2.5850 0.0000
4 ENSG00000248654 MTCO3P44 MT-CO3 pseudogene 44 2.5850 0.0000
5 ENSG00000250050 MTND4P9 MT-ND4 pseudogene 9 2.5850 0.0000
6 ENSG00000251353 MTND3P5 MT-ND3 pseudogene 5 2.5850 0.0000
7 ENSG00000202478 RNU6-81P RNA, U6 small nuclear 81, pseudogene 2.3219 0.0000
8 ENSG00000214313 AZGP1P1 AZGP1 pseudogene 1 2.3219 0.0000
9 ENSG00000215032 GNL3LP1 G protein nucleolar 3 like pseudogene 1 2.3219 0.0000
10 ENSG00000226722 LINC00424 long intergenic non-protein coding RNA 424 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000226627 SHANK2-AS1 SHANK2 antisense RNA 1 -1.6148 0.2699
63340 ENSG00000160013 PTGIR prostaglandin I2 receptor -1.6147 1.0000
63339 ENSG00000136274 NACAD NAC alpha domain containing -1.6147 0.0010
63338 ENSG00000267634 RPL7L1P5 ribosomal protein L7 like 1 pseudogene 5 -1.6136 0.6649
63337 ENSG00000278932 novel transcript -1.6133 0.1842
63336 ENSG00000004864 SLC25A13 solute carrier family 25 member 13 -1.6132 0.5090
63335 ENSG00000092330 TERF1 interacting nuclear factor 2 -1.6126 0.1783
63334 ENSG00000139116 KIF21A kinesin family member 21A -1.6119 0.3865
63333 ENSG00000196659 TTC30B tetratricopeptide repeat domain 30B -1.6085 0.4066
63332 ENSG00000188306 LRRIQ4 leucine rich repeats and IQ motif containing 4 -1.6073 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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