Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481555
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481555
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP074598
SRP074598_M28
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Zygote
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000233363
novel transcript
2.8074
0.0000
2
ENSG00000243593
LINC02049
long intergenic non-protein coding RNA 2049
2.5850
0.0000
3
ENSG00000248133
MTND4LP22
MT-ND4L pseudogene 22
2.5850
0.0000
4
ENSG00000248654
MTCO3P44
MT-CO3 pseudogene 44
2.5850
0.0000
5
ENSG00000250050
MTND4P9
MT-ND4 pseudogene 9
2.5850
0.0000
6
ENSG00000251353
MTND3P5
MT-ND3 pseudogene 5
2.5850
0.0000
7
ENSG00000202478
RNU6-81P
RNA, U6 small nuclear 81, pseudogene
2.3219
0.0000
8
ENSG00000214313
AZGP1P1
AZGP1 pseudogene 1
2.3219
0.0000
9
ENSG00000215032
GNL3LP1
G protein nucleolar 3 like pseudogene 1
2.3219
0.0000
10
ENSG00000226722
LINC00424
long intergenic non-protein coding RNA 424
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000259084
novel transcript
-1.5850
1.0000
63127
ENSG00000259053
novel transcript
-1.5850
1.0000
63126
ENSG00000259041
novel transcript
-1.5850
1.0000
63125
ENSG00000258870
EIF4EBP1P1
eukaryotic translation initiation factor 4E binding protein 1 pseudogene 1
-1.5850
1.0000
63124
ENSG00000258866
novel transcript
-1.5850
1.0000
63123
ENSG00000258678
LINC02317
long intergenic non-protein coding RNA 2317
-1.5850
1.0000
63122
ENSG00000258566
H1 histone family, member O, oocyte-specific (H1FOO) pseudogene
-1.5850
1.0000
63121
ENSG00000258529
novel protein
-1.5850
0.4066
63120
ENSG00000258448
required for meiotic nuclear division 1 homolog (S. cerevisiae) (RMND1) pseudogene
-1.5850
1.0000
63119
ENSG00000258378
novel transcript, antisense to TIMM9
-1.5850
0.4202
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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