Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2481556
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481556
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP074598
SRP074598_M29
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Metaphase II oocyte
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000259019
EIF4BP1
eukaryotic translation initiation factor 4B pseudogene 1
2.8074
0.0000
2
ENSG00000280033
TEC
2.8074
0.0000
3
ENSG00000261126
RBFADN
RBFA downstream neighbor
2.7398
0.0000
4
ENSG00000133678
TMEM254
transmembrane protein 254
2.5850
0.0000
5
ENSG00000137558
PI15
peptidase inhibitor 15
2.5850
0.0000
6
ENSG00000199024
MIR103A2
microRNA 103a-2
2.5850
0.0000
7
ENSG00000225460
ubiquitin-conjugating enzyme E2 pseudogene
2.5850
0.0000
8
ENSG00000226411
phosphorylase kinase, gamma 1 (muscle) (PHKG1) pseudogene
2.5850
0.0000
9
ENSG00000230091
TMEM254-AS1
TMEM254 antisense RNA 1
2.5850
0.0000
10
ENSG00000230305
postmeiotic segregation increased 2-like 5 (PMS2L5) pseudogene
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000224308
LINC01527
long intergenic non-protein coding RNA 1527
-1.8115
1.0000
63127
ENSG00000246792
novel transcript
-1.8091
0.0295
63126
ENSG00000128654
MTX2
metaxin 2
-1.8080
0.5329
63125
ENSG00000251770
RNA5SP486
RNA, 5S ribosomal pseudogene 486
-1.8078
0.8053
63124
ENSG00000203761
MSTO2P
misato family member 2, pseudogene
-1.8077
0.1162
63123
ENSG00000236355
novel transcript
-1.8074
0.2418
63122
ENSG00000146373
RNF217
ring finger protein 217
-1.8069
0.3558
63120
ENSG00000224831
TMEM183B
transmembrane protein 183B
-1.8059
0.0497
63119
ENSG00000103449
SALL1
spalt like transcription factor 1
-1.8058
0.2631
10
ENSG00000230305
postmeiotic segregation increased 2-like 5 (PMS2L5) pseudogene
2.5850
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...