Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481556

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481556


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M29Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259019 EIF4BP1 eukaryotic translation initiation factor 4B pseudogene 1 2.8074 0.0000
2 ENSG00000280033 TEC 2.8074 0.0000
3 ENSG00000261126 RBFADN RBFA downstream neighbor 2.7398 0.0000
4 ENSG00000133678 TMEM254 transmembrane protein 254 2.5850 0.0000
5 ENSG00000137558 PI15 peptidase inhibitor 15 2.5850 0.0000
6 ENSG00000199024 MIR103A2 microRNA 103a-2 2.5850 0.0000
7 ENSG00000225460 ubiquitin-conjugating enzyme E2 pseudogene 2.5850 0.0000
8 ENSG00000226411 phosphorylase kinase, gamma 1 (muscle) (PHKG1) pseudogene 2.5850 0.0000
9 ENSG00000230091 TMEM254-AS1 TMEM254 antisense RNA 1 2.5850 0.0000
10 ENSG00000230305 postmeiotic segregation increased 2-like 5 (PMS2L5) pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000224308 LINC01527 long intergenic non-protein coding RNA 1527 -1.8115 1.0000
63127 ENSG00000246792 novel transcript -1.8091 0.0295
63126 ENSG00000128654 MTX2 metaxin 2 -1.8080 0.5329
63125 ENSG00000251770 RNA5SP486 RNA, 5S ribosomal pseudogene 486 -1.8078 0.8053
63124 ENSG00000203761 MSTO2P misato family member 2, pseudogene -1.8077 0.1162
63123 ENSG00000236355 novel transcript -1.8074 0.2418
63122 ENSG00000146373 RNF217 ring finger protein 217 -1.8069 0.3558
63120 ENSG00000224831 TMEM183B transmembrane protein 183B -1.8059 0.0497
63119 ENSG00000103449 SALL1 spalt like transcription factor 1 -1.8058 0.2631
10 ENSG00000230305 postmeiotic segregation increased 2-like 5 (PMS2L5) pseudogene 2.5850 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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