SHOGoiN Cell Methylome: GSM2481556

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481556


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M29Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259019 EIF4BP1 eukaryotic translation initiation factor 4B pseudogene 1 2.8074 0.0000
2 ENSG00000280033 TEC 2.8074 0.0000
3 ENSG00000261126 RBFADN RBFA downstream neighbor 2.7398 0.0000
4 ENSG00000133678 TMEM254 transmembrane protein 254 2.5850 0.0000
5 ENSG00000137558 PI15 peptidase inhibitor 15 2.5850 0.0000
6 ENSG00000199024 MIR103A2 microRNA 103a-2 2.5850 0.0000
7 ENSG00000225460 ubiquitin-conjugating enzyme E2 pseudogene 2.5850 0.0000
8 ENSG00000226411 phosphorylase kinase, gamma 1 (muscle) (PHKG1) pseudogene 2.5850 0.0000
9 ENSG00000230091 TMEM254-AS1 TMEM254 antisense RNA 1 2.5850 0.0000
10 ENSG00000230305 postmeiotic segregation increased 2-like 5 (PMS2L5) pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000278875 TEC -1.9254 1.0000
63340 ENSG00000163950 SLBP stem-loop binding protein -1.9245 0.0211
63339 ENSG00000137090 DMRT1 doublesex and mab-3 related transcription factor 1 -1.9244 0.0015
63338 ENSG00000248172 novel transcript -1.9227 0.0046
63337 ENSG00000133028 SCO1 SCO cytochrome c oxidase assembly protein 1 -1.9207 0.0517
63336 ENSG00000178803 ADORA2A-AS1 ADORA2A antisense RNA 1 -1.9196 0.0211
63335 ENSG00000201749 NA -1.9187 0.0162
63334 ENSG00000242736 TRBV1 T cell receptor beta variable 1 (pseudogene) -1.9170 0.6268
63333 ENSG00000226660 TRBV2 T cell receptor beta variable 2 -1.9170 0.6268
63332 ENSG00000217483 polymerase (DNA directed), delta 1, catalytic subunit 125kDa (POLD1) pseudogene -1.9170 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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