SHOGoiN Cell Methylome: GSM2481556
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481556 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP074598 | SRP074598_M29 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Metaphase II oocyte | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000259019 | EIF4BP1 | eukaryotic translation initiation factor 4B pseudogene 1 | 2.8074 | 0.0000 |
| 2 | ENSG00000280033 | TEC | 2.8074 | 0.0000 | |
| 3 | ENSG00000261126 | RBFADN | RBFA downstream neighbor | 2.7398 | 0.0000 |
| 4 | ENSG00000133678 | TMEM254 | transmembrane protein 254 | 2.5850 | 0.0000 |
| 5 | ENSG00000137558 | PI15 | peptidase inhibitor 15 | 2.5850 | 0.0000 |
| 6 | ENSG00000199024 | MIR103A2 | microRNA 103a-2 | 2.5850 | 0.0000 |
| 7 | ENSG00000225460 | ubiquitin-conjugating enzyme E2 pseudogene | 2.5850 | 0.0000 | |
| 8 | ENSG00000226411 | phosphorylase kinase, gamma 1 (muscle) (PHKG1) pseudogene | 2.5850 | 0.0000 | |
| 9 | ENSG00000230091 | TMEM254-AS1 | TMEM254 antisense RNA 1 | 2.5850 | 0.0000 |
| 10 | ENSG00000230305 | postmeiotic segregation increased 2-like 5 (PMS2L5) pseudogene | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000278875 | TEC | -1.9254 | 1.0000 | |
| 63340 | ENSG00000163950 | SLBP | stem-loop binding protein | -1.9245 | 0.0211 |
| 63339 | ENSG00000137090 | DMRT1 | doublesex and mab-3 related transcription factor 1 | -1.9244 | 0.0015 |
| 63338 | ENSG00000248172 | novel transcript | -1.9227 | 0.0046 | |
| 63337 | ENSG00000133028 | SCO1 | SCO cytochrome c oxidase assembly protein 1 | -1.9207 | 0.0517 |
| 63336 | ENSG00000178803 | ADORA2A-AS1 | ADORA2A antisense RNA 1 | -1.9196 | 0.0211 |
| 63335 | ENSG00000201749 | NA | -1.9187 | 0.0162 | |
| 63334 | ENSG00000242736 | TRBV1 | T cell receptor beta variable 1 (pseudogene) | -1.9170 | 0.6268 |
| 63333 | ENSG00000226660 | TRBV2 | T cell receptor beta variable 2 | -1.9170 | 0.6268 |
| 63332 | ENSG00000217483 | polymerase (DNA directed), delta 1, catalytic subunit 125kDa (POLD1) pseudogene | -1.9170 | 1.0000 |
