Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481556

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481556 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP074598	SRP074598_M29	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Metaphase II oocyte	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000259019	EIF4BP1	eukaryotic translation initiation factor 4B pseudogene 1	2.8074	0.0000
2	ENSG00000280033		TEC	2.8074	0.0000
3	ENSG00000261126	RBFADN	RBFA downstream neighbor	2.7398	0.0000
4	ENSG00000133678	TMEM254	transmembrane protein 254	2.5850	0.0000
5	ENSG00000137558	PI15	peptidase inhibitor 15	2.5850	0.0000
6	ENSG00000199024	MIR103A2	microRNA 103a-2	2.5850	0.0000
7	ENSG00000225460		ubiquitin-conjugating enzyme E2 pseudogene	2.5850	0.0000
8	ENSG00000226411		phosphorylase kinase, gamma 1 (muscle) (PHKG1) pseudogene	2.5850	0.0000
9	ENSG00000230091	TMEM254-AS1	TMEM254 antisense RNA 1	2.5850	0.0000
10	ENSG00000230305		postmeiotic segregation increased 2-like 5 (PMS2L5) pseudogene	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000224308	LINC01527	long intergenic non-protein coding RNA 1527	-1.8115	1.0000
63127	ENSG00000246792		novel transcript	-1.8091	0.0295
63126	ENSG00000128654	MTX2	metaxin 2	-1.8080	0.5329
63125	ENSG00000251770	RNA5SP486	RNA, 5S ribosomal pseudogene 486	-1.8078	0.8053
63124	ENSG00000203761	MSTO2P	misato family member 2, pseudogene	-1.8077	0.1162
63123	ENSG00000236355		novel transcript	-1.8074	0.2418
63122	ENSG00000146373	RNF217	ring finger protein 217	-1.8069	0.3558
63120	ENSG00000224831	TMEM183B	transmembrane protein 183B	-1.8059	0.0497
63119	ENSG00000103449	SALL1	spalt like transcription factor 1	-1.8058	0.2631
10	ENSG00000230305		postmeiotic segregation increased 2-like 5 (PMS2L5) pseudogene	2.5850	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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