Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481557

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481557 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP074598	SRP074598_M30	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Metaphase II oocyte	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
2	ENSG00000258401	ATP5MC2P2	ATP synthase membrane subunit c locus 2 pseudogene 2	2.8074	0.0000
3	ENSG00000232349	YBX1P7	Y-box binding protein 1 pseudogene 7	2.6591	0.0000
4	ENSG00000057468	MSH4	mutS homolog 4	2.5850	0.0000
5	ENSG00000163510	CWC22	CWC22 spliceosome associated protein homolog	2.5850	0.0000
6	ENSG00000165805	C12orf50	chromosome 12 open reading frame 50	2.5850	0.0000
7	ENSG00000201364	RN7SKP37	RN7SK pseudogene 37	2.5850	0.0000
8	ENSG00000229242		novel transcript	2.5850	0.0000
9	ENSG00000243033	GAPDHP47	glyceraldehyde 3 phosphate dehydrogenase pseudogene 47	2.5850	0.0000
10	ENSG00000244056	RN7SL417P	RNA, 7SL, cytoplasmic 417, pseudogene	2.5850	0.0000
63119	ENSG00000256146		novel transcript	-1.6667	1.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000085721	RRN3	RRN3 homolog, RNA polymerase I transcription factor	-1.6708	0.1100
63127	ENSG00000125740	FOSB	FosB proto-oncogene, AP-1 transcription factor subunit	-1.6687	0.0000
63126	ENSG00000198088	NUP62CL	nucleoporin 62 C-terminal like	-1.6680	0.2532
63125	ENSG00000253549	CA3-AS1	CA3 antisense RNA 1	-1.6678	0.3837
63124	ENSG00000104267	CA2	carbonic anhydrase 2	-1.6678	0.3837
63123	ENSG00000112769	LAMA4	laminin subunit alpha 4	-1.6669	0.0148
63122	ENSG00000260690	CYCSP39	CYCS pseudogene 39	-1.6667	1.0000
63121	ENSG00000260670		novel transcript	-1.6667	1.0000
63120	ENSG00000259695		ribosomal protein L17 (RPL17) pseudogene	-1.6667	1.0000
63119	ENSG00000256146		novel transcript	-1.6667	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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