Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481557

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481557


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M30Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
2 ENSG00000258401 ATP5MC2P2 ATP synthase membrane subunit c locus 2 pseudogene 2 2.8074 0.0000
3 ENSG00000232349 YBX1P7 Y-box binding protein 1 pseudogene 7 2.6591 0.0000
4 ENSG00000057468 MSH4 mutS homolog 4 2.5850 0.0000
5 ENSG00000163510 CWC22 CWC22 spliceosome associated protein homolog 2.5850 0.0000
6 ENSG00000165805 C12orf50 chromosome 12 open reading frame 50 2.5850 0.0000
7 ENSG00000201364 RN7SKP37 RN7SK pseudogene 37 2.5850 0.0000
8 ENSG00000229242 novel transcript 2.5850 0.0000
9 ENSG00000243033 GAPDHP47 glyceraldehyde 3 phosphate dehydrogenase pseudogene 47 2.5850 0.0000
10 ENSG00000244056 RN7SL417P RNA, 7SL, cytoplasmic 417, pseudogene 2.5850 0.0000
63119 ENSG00000256146 novel transcript -1.6667 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000085721 RRN3 RRN3 homolog, RNA polymerase I transcription factor -1.6708 0.1100
63127 ENSG00000125740 FOSB FosB proto-oncogene, AP-1 transcription factor subunit -1.6687 0.0000
63126 ENSG00000198088 NUP62CL nucleoporin 62 C-terminal like -1.6680 0.2532
63125 ENSG00000253549 CA3-AS1 CA3 antisense RNA 1 -1.6678 0.3837
63124 ENSG00000104267 CA2 carbonic anhydrase 2 -1.6678 0.3837
63123 ENSG00000112769 LAMA4 laminin subunit alpha 4 -1.6669 0.0148
63122 ENSG00000260690 CYCSP39 CYCS pseudogene 39 -1.6667 1.0000
63121 ENSG00000260670 novel transcript -1.6667 1.0000
63120 ENSG00000259695 ribosomal protein L17 (RPL17) pseudogene -1.6667 1.0000
63119 ENSG00000256146 novel transcript -1.6667 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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