SHOGoiN Cell Methylome: GSM2481557
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481557 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP074598 | SRP074598_M30 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Metaphase II oocyte | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000279645 | TEC | 3.1699 | 0.0000 | |
| 2 | ENSG00000258401 | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) (ATP5G2) pseudogene | 2.8074 | 0.0000 | |
| 3 | ENSG00000232349 | YBX1P7 | Y-box binding protein 1 pseudogene 7 | 2.6591 | 0.0000 |
| 4 | ENSG00000057468 | MSH4 | mutS homolog 4 | 2.5850 | 0.0000 |
| 5 | ENSG00000163510 | CWC22 | CWC22 spliceosome associated protein homolog | 2.5850 | 0.0000 |
| 6 | ENSG00000165805 | C12orf50 | chromosome 12 open reading frame 50 | 2.5850 | 0.0000 |
| 7 | ENSG00000201364 | RN7SKP37 | RN7SK pseudogene 37 | 2.5850 | 0.0000 |
| 8 | ENSG00000229242 | novel transcript | 2.5850 | 0.0000 | |
| 9 | ENSG00000243033 | GAPDHP47 | glyceraldehyde 3 phosphate dehydrogenase pseudogene 47 | 2.5850 | 0.0000 |
| 10 | ENSG00000244056 | RN7SL417P | RNA, 7SL, cytoplasmic 417, pseudogene | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000258976 | novel transcript | -1.7959 | 0.0133 | |
| 63340 | ENSG00000225293 | ABCD1P4 | ATP binding cassette subfamily D member 1 pseudogene 4 | -1.7954 | 0.0018 |
| 63339 | ENSG00000226206 | novel transcript | -1.7930 | 0.3974 | |
| 63338 | ENSG00000277639 | novel protein | -1.7925 | 1.0000 | |
| 63336 | ENSG00000238730 | RNU7-164P | RNA, U7 small nuclear 164 pseudogene | -1.7925 | 1.0000 |
| 63335 | ENSG00000228120 | novel transcript | -1.7925 | 0.5362 | |
| 63334 | ENSG00000224054 | ubinuclein 1 (UBN1) pseudogene | -1.7925 | 0.6285 | |
| 63333 | ENSG00000218048 | leucine rich repeat containing 59 (LRRC59) pseudogene | -1.7925 | 0.5742 | |
| 63332 | ENSG00000213921 | LEUTX | leucine twenty homeobox | -1.7925 | 1.0000 |
| 10 | ENSG00000244056 | RN7SL417P | RNA, 7SL, cytoplasmic 417, pseudogene | 2.5850 | 0.0000 |
