Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2481557
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481557
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP074598
SRP074598_M30
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Metaphase II oocyte
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
2
ENSG00000258401
ATP5MC2P2
ATP synthase membrane subunit c locus 2 pseudogene 2
2.8074
0.0000
3
ENSG00000232349
YBX1P7
Y-box binding protein 1 pseudogene 7
2.6591
0.0000
4
ENSG00000057468
MSH4
mutS homolog 4
2.5850
0.0000
5
ENSG00000163510
CWC22
CWC22 spliceosome associated protein homolog
2.5850
0.0000
6
ENSG00000165805
C12orf50
chromosome 12 open reading frame 50
2.5850
0.0000
7
ENSG00000201364
RN7SKP37
RN7SK pseudogene 37
2.5850
0.0000
8
ENSG00000229242
novel transcript
2.5850
0.0000
9
ENSG00000243033
GAPDHP47
glyceraldehyde 3 phosphate dehydrogenase pseudogene 47
2.5850
0.0000
10
ENSG00000244056
RN7SL417P
RNA, 7SL, cytoplasmic 417, pseudogene
2.5850
0.0000
63119
ENSG00000256146
novel transcript
-1.6667
1.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000085721
RRN3
RRN3 homolog, RNA polymerase I transcription factor
-1.6708
0.1100
63127
ENSG00000125740
FOSB
FosB proto-oncogene, AP-1 transcription factor subunit
-1.6687
0.0000
63126
ENSG00000198088
NUP62CL
nucleoporin 62 C-terminal like
-1.6680
0.2532
63125
ENSG00000253549
CA3-AS1
CA3 antisense RNA 1
-1.6678
0.3837
63124
ENSG00000104267
CA2
carbonic anhydrase 2
-1.6678
0.3837
63123
ENSG00000112769
LAMA4
laminin subunit alpha 4
-1.6669
0.0148
63122
ENSG00000260690
CYCSP39
CYCS pseudogene 39
-1.6667
1.0000
63121
ENSG00000260670
novel transcript
-1.6667
1.0000
63120
ENSG00000259695
ribosomal protein L17 (RPL17) pseudogene
-1.6667
1.0000
63119
ENSG00000256146
novel transcript
-1.6667
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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