SHOGoiN Cell Methylome: GSM2481557

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481557


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M30Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000279645 TEC 3.1699 0.0000
2 ENSG00000258401 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) (ATP5G2) pseudogene 2.8074 0.0000
3 ENSG00000232349 YBX1P7 Y-box binding protein 1 pseudogene 7 2.6591 0.0000
4 ENSG00000057468 MSH4 mutS homolog 4 2.5850 0.0000
5 ENSG00000163510 CWC22 CWC22 spliceosome associated protein homolog 2.5850 0.0000
6 ENSG00000165805 C12orf50 chromosome 12 open reading frame 50 2.5850 0.0000
7 ENSG00000201364 RN7SKP37 RN7SK pseudogene 37 2.5850 0.0000
8 ENSG00000229242 novel transcript 2.5850 0.0000
9 ENSG00000243033 GAPDHP47 glyceraldehyde 3 phosphate dehydrogenase pseudogene 47 2.5850 0.0000
10 ENSG00000244056 RN7SL417P RNA, 7SL, cytoplasmic 417, pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000258976 novel transcript -1.7959 0.0133
63340 ENSG00000225293 ABCD1P4 ATP binding cassette subfamily D member 1 pseudogene 4 -1.7954 0.0018
63339 ENSG00000226206 novel transcript -1.7930 0.3974
63338 ENSG00000277639 novel protein -1.7925 1.0000
63336 ENSG00000238730 RNU7-164P RNA, U7 small nuclear 164 pseudogene -1.7925 1.0000
63335 ENSG00000228120 novel transcript -1.7925 0.5362
63334 ENSG00000224054 ubinuclein 1 (UBN1) pseudogene -1.7925 0.6285
63333 ENSG00000218048 leucine rich repeat containing 59 (LRRC59) pseudogene -1.7925 0.5742
63332 ENSG00000213921 LEUTX leucine twenty homeobox -1.7925 1.0000
10 ENSG00000244056 RN7SL417P RNA, 7SL, cytoplasmic 417, pseudogene 2.5850 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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