SHOGoiN Cell Methylome: GSM2481558
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481558 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP074598 | SRP074598_M31 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Zygote | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000257239 | novel transcript | 2.8074 | 0.0000 | |
| 2 | ENSG00000250954 | novel transcript | 2.5850 | 0.0001 | |
| 3 | ENSG00000251261 | OR7H2P | olfactory receptor family 7 subfamily H member 2 pseudogene | 2.5850 | 0.0001 |
| 4 | ENSG00000267743 | novel transcript, antisense to NEDD4L | 2.5850 | 0.0000 | |
| 5 | ENSG00000276123 | NA | 2.5850 | 0.0000 | |
| 6 | ENSG00000236512 | ribosomal protein L29 (RPL29) pseudogene | 2.4637 | 0.0000 | |
| 7 | ENSG00000273209 | novel transcript | 2.4534 | 0.0000 | |
| 8 | ENSG00000241054 | novel transcript | 2.3900 | 0.0000 | |
| 9 | ENSG00000168172 | HOOK3 | hook microtubule tethering protein 3 | 2.3350 | 0.0000 |
| 10 | ENSG00000254673 | novel protein | 2.3350 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63340 | ENSG00000222987 | RN7SKP68 | RN7SK pseudogene 68 | -1.7744 | 0.0003 |
| 63339 | ENSG00000263764 | SNORD43 | small nucleolar RNA, C/D box 43 | -1.7736 | 0.0061 |
| 63338 | ENSG00000283673 | MIR4531 | microRNA 4531 | -1.7733 | 0.0000 |
| 63337 | ENSG00000107371 | EXOSC3 | exosome component 3 | -1.7724 | 0.0000 |
| 63336 | ENSG00000236998 | adaptor-related protein complex 3, mu 2 subunit (AP3M2) pseudogene | -1.7723 | 0.0017 | |
| 63335 | ENSG00000159228 | CBR1 | carbonyl reductase 1 | -1.7720 | 0.0000 |
| 63334 | ENSG00000196503 | ARL9 | ADP ribosylation factor like GTPase 9 | -1.7692 | 0.0000 |
| 63333 | ENSG00000257524 | novel protein | -1.7686 | 0.0000 | |
| 63332 | ENSG00000243176 | novel transcript | -1.7680 | 0.0000 | |
| 10 | ENSG00000254673 | novel protein | 2.3350 | 0.0000 |
