SHOGoiN Cell Methylome: GSM2481558

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481558


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M31Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257239 novel transcript 2.8074 0.0000
2 ENSG00000250954 novel transcript 2.5850 0.0001
3 ENSG00000251261 OR7H2P olfactory receptor family 7 subfamily H member 2 pseudogene 2.5850 0.0001
4 ENSG00000267743 novel transcript, antisense to NEDD4L 2.5850 0.0000
5 ENSG00000276123 NA 2.5850 0.0000
6 ENSG00000236512 ribosomal protein L29 (RPL29) pseudogene 2.4637 0.0000
7 ENSG00000273209 novel transcript 2.4534 0.0000
8 ENSG00000241054 novel transcript 2.3900 0.0000
9 ENSG00000168172 HOOK3 hook microtubule tethering protein 3 2.3350 0.0000
10 ENSG00000254673 novel protein 2.3350 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63340 ENSG00000222987 RN7SKP68 RN7SK pseudogene 68 -1.7744 0.0003
63339 ENSG00000263764 SNORD43 small nucleolar RNA, C/D box 43 -1.7736 0.0061
63338 ENSG00000283673 MIR4531 microRNA 4531 -1.7733 0.0000
63337 ENSG00000107371 EXOSC3 exosome component 3 -1.7724 0.0000
63336 ENSG00000236998 adaptor-related protein complex 3, mu 2 subunit (AP3M2) pseudogene -1.7723 0.0017
63335 ENSG00000159228 CBR1 carbonyl reductase 1 -1.7720 0.0000
63334 ENSG00000196503 ARL9 ADP ribosylation factor like GTPase 9 -1.7692 0.0000
63333 ENSG00000257524 novel protein -1.7686 0.0000
63332 ENSG00000243176 novel transcript -1.7680 0.0000
10 ENSG00000254673 novel protein 2.3350 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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