Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481558

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481558 Profile download	7010000000000000000000-769	Sequence Read Archive	SRP074598	SRP074598_M31	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Zygote	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000257239		novel transcript	2.8074	0.0000
2	ENSG00000250954		novel transcript	2.5850	0.0001
3	ENSG00000251261	OR7H2P	olfactory receptor family 7 subfamily H member 2 pseudogene	2.5850	0.0001
4	ENSG00000267743		novel transcript, antisense to NEDD4L	2.5850	0.0000
5	ENSG00000276123		Metazoan signal recognition particle RNA	2.5850	0.0000
6	ENSG00000236512		ribosomal protein L29 (RPL29) pseudogene	2.4637	0.0000
7	ENSG00000273209		novel transcript	2.4534	0.0000
8	ENSG00000241054		novel transcript	2.3900	0.0000
9	ENSG00000168172	HOOK3	hook microtubule tethering protein 3	2.3350	0.0000
10	ENSG00000254673		novel protein	2.3350	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000119004	CYP20A1	cytochrome P450 family 20 subfamily A member 1	-1.6734	0.0000
63127	ENSG00000214401	KANSL1-AS1	KANSL1 antisense RNA 1	-1.6734	0.0000
63126	ENSG00000240849	PEDS1	plasmanylethanolamine desaturase 1	-1.6719	0.0000
63125	ENSG00000183248	PRR36	proline rich 36	-1.6718	0.0000
63124	ENSG00000123739	PLA2G12A	phospholipase A2 group XIIA	-1.6715	0.0000
63123	ENSG00000243877	HMGB1P38	high mobility group box 1 pseudogene 38	-1.6696	0.0000
63122	ENSG00000252051	RN7SKP276	RN7SK pseudogene 276	-1.6696	0.0000
63121	ENSG00000142676	RPL11	ribosomal protein L11	-1.6688	0.0000
63120	ENSG00000081377	CDC14B	cell division cycle 14B	-1.6682	0.0000
63119	ENSG00000272366		novel transcript	-1.6678	0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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