Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481558

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481558


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M31Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257239 novel transcript 2.8074 0.0000
2 ENSG00000250954 novel transcript 2.5850 0.0001
3 ENSG00000251261 OR7H2P olfactory receptor family 7 subfamily H member 2 pseudogene 2.5850 0.0001
4 ENSG00000267743 novel transcript, antisense to NEDD4L 2.5850 0.0000
5 ENSG00000276123 Metazoan signal recognition particle RNA 2.5850 0.0000
6 ENSG00000236512 ribosomal protein L29 (RPL29) pseudogene 2.4637 0.0000
7 ENSG00000273209 novel transcript 2.4534 0.0000
8 ENSG00000241054 novel transcript 2.3900 0.0000
9 ENSG00000168172 HOOK3 hook microtubule tethering protein 3 2.3350 0.0000
10 ENSG00000254673 novel protein 2.3350 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000119004 CYP20A1 cytochrome P450 family 20 subfamily A member 1 -1.6734 0.0000
63127 ENSG00000214401 KANSL1-AS1 KANSL1 antisense RNA 1 -1.6734 0.0000
63126 ENSG00000240849 PEDS1 plasmanylethanolamine desaturase 1 -1.6719 0.0000
63125 ENSG00000183248 PRR36 proline rich 36 -1.6718 0.0000
63124 ENSG00000123739 PLA2G12A phospholipase A2 group XIIA -1.6715 0.0000
63123 ENSG00000243877 HMGB1P38 high mobility group box 1 pseudogene 38 -1.6696 0.0000
63122 ENSG00000252051 RN7SKP276 RN7SK pseudogene 276 -1.6696 0.0000
63121 ENSG00000142676 RPL11 ribosomal protein L11 -1.6688 0.0000
63120 ENSG00000081377 CDC14B cell division cycle 14B -1.6682 0.0000
63119 ENSG00000272366 novel transcript -1.6678 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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