Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2481558
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481558
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP074598
SRP074598_M31
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Zygote
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000257239
novel transcript
2.8074
0.0000
2
ENSG00000250954
novel transcript
2.5850
0.0001
3
ENSG00000251261
OR7H2P
olfactory receptor family 7 subfamily H member 2 pseudogene
2.5850
0.0001
4
ENSG00000267743
novel transcript, antisense to NEDD4L
2.5850
0.0000
5
ENSG00000276123
Metazoan signal recognition particle RNA
2.5850
0.0000
6
ENSG00000236512
ribosomal protein L29 (RPL29) pseudogene
2.4637
0.0000
7
ENSG00000273209
novel transcript
2.4534
0.0000
8
ENSG00000241054
novel transcript
2.3900
0.0000
9
ENSG00000168172
HOOK3
hook microtubule tethering protein 3
2.3350
0.0000
10
ENSG00000254673
novel protein
2.3350
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000119004
CYP20A1
cytochrome P450 family 20 subfamily A member 1
-1.6734
0.0000
63127
ENSG00000214401
KANSL1-AS1
KANSL1 antisense RNA 1
-1.6734
0.0000
63126
ENSG00000240849
PEDS1
plasmanylethanolamine desaturase 1
-1.6719
0.0000
63125
ENSG00000183248
PRR36
proline rich 36
-1.6718
0.0000
63124
ENSG00000123739
PLA2G12A
phospholipase A2 group XIIA
-1.6715
0.0000
63123
ENSG00000243877
HMGB1P38
high mobility group box 1 pseudogene 38
-1.6696
0.0000
63122
ENSG00000252051
RN7SKP276
RN7SK pseudogene 276
-1.6696
0.0000
63121
ENSG00000142676
RPL11
ribosomal protein L11
-1.6688
0.0000
63120
ENSG00000081377
CDC14B
cell division cycle 14B
-1.6682
0.0000
63119
ENSG00000272366
novel transcript
-1.6678
0.0001
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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