Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481559

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481559


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M32Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000124193 SRSF6 serine and arginine rich splicing factor 6 2.7549 0.0000
2 ENSG00000025156 HSF2 heat shock transcription factor 2 2.5850 0.0000
3 ENSG00000172289 OR10V1 olfactory receptor family 10 subfamily V member 1 2.5850 0.0000
4 ENSG00000236992 RPL12P12 ribosomal protein L12 pseudogene 12 2.5850 0.0000
5 ENSG00000254404 novel transcript 2.5850 0.0000
6 ENSG00000248618 ENPP7P3 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 3 2.3900 0.0000
7 ENSG00000078319 PMS2P1 PMS1 homolog 2, mismatch repair system component pseudogene 1 2.3219 0.0000
8 ENSG00000083817 ZNF416 zinc finger protein 416 2.3219 0.0000
9 ENSG00000117586 TNFSF4 TNF superfamily member 4 2.3219 0.0000
10 ENSG00000120329 SLC25A2 solute carrier family 25 member 2 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000200390 Y RNA -1.5850 1.0000
63127 ENSG00000200164 Y RNA -1.5850 0.6413
63126 ENSG00000200107 RNU6-1249P RNA, U6 small nuclear 1249, pseudogene -1.5850 1.0000
63125 ENSG00000199827 RNU6-1290P RNA, U6 small nuclear 1290, pseudogene -1.5850 1.0000
63124 ENSG00000199677 Y RNA -1.5850 0.6282
63123 ENSG00000199394 RNU6-600P RNA, U6 small nuclear 600, pseudogene -1.5850 1.0000
63122 ENSG00000198930 CSAG1 chondrosarcoma associated gene 1 -1.5850 1.0000
63121 ENSG00000198022 SAGE2P sarcoma antigen 2, pseudogene -1.5850 1.0000
63120 ENSG00000197134 ZNF257 zinc finger protein 257 -1.5850 1.0000
63119 ENSG00000196890 H2BU1 H2B.U histone 1 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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