Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481560

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481560


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M33Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236909 OR2P1P olfactory receptor family 2 subfamily P member 1 pseudogene 2.5850 0.0000
3 ENSG00000232387 SKA2P1 spindle and kinetochore associated complex subunit 2 pseudogene 1 2.5192 0.0000
4 ENSG00000213478 CFL1P2 cofilin 1 pseudogene 2 2.4534 0.0000
5 ENSG00000215546 DKKL1P1 DKKL1 pseudogene 1 2.3764 0.0000
6 ENSG00000105708 ZNF14 zinc finger protein 14 2.3219 0.0000
7 ENSG00000117586 TNFSF4 TNF superfamily member 4 2.3219 0.0001
8 ENSG00000164266 SPINK1 serine peptidase inhibitor Kazal type 1 2.3219 0.0001
9 ENSG00000201176 RNU6-853P RNA, U6 small nuclear 853, pseudogene 2.3219 0.0001
10 ENSG00000207260 RNU6-35P RNA, U6 small nuclear 35, pseudogene 2.3219 0.0001
63120 ENSG00000252892 RNU6-548P RNA, U6 small nuclear 548, pseudogene -1.6073 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000136197 C7orf25 chromosome 7 open reading frame 25 -1.6115 0.1560
63127 ENSG00000280169 novel transcript, antisense to GGACT -1.6113 0.0068
63126 ENSG00000234354 RPS26P47 ribosomal protein S26 pseudogene 47 -1.6113 0.0068
63125 ENSG00000102302 FGD1 FYVE, RhoGEF and PH domain containing 1 -1.6108 0.0222
63124 ENSG00000204257 HLA-DMA major histocompatibility complex, class II, DM alpha -1.6103 0.0157
63123 ENSG00000100302 RASD2 RASD family member 2 -1.6084 0.0007
63122 ENSG00000173457 PPP1R14B protein phosphatase 1 regulatory inhibitor subunit 14B -1.6082 0.0001
63121 ENSG00000263212 novel transcript -1.6078 0.0000
63120 ENSG00000252892 RNU6-548P RNA, U6 small nuclear 548, pseudogene -1.6073 0.0000
10 ENSG00000207260 RNU6-35P RNA, U6 small nuclear 35, pseudogene 2.3219 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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