SHOGoiN Cell Methylome: GSM2481560

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481560


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M33Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236909 OR2P1P olfactory receptor family 2 subfamily P member 1 pseudogene 2.5850 0.0000
3 ENSG00000232387 SKA2P1 spindle and kinetochore associated complex subunit 2 pseudogene 1 2.5192 0.0000
4 ENSG00000213478 CFL1P2 cofilin 1 pseudogene 2 2.4534 0.0000
5 ENSG00000215546 DKKL1P1 DKKL1 pseudogene 1 2.3764 0.0000
6 ENSG00000105708 ZNF14 zinc finger protein 14 2.3219 0.0000
7 ENSG00000117586 TNFSF4 TNF superfamily member 4 2.3219 0.0001
8 ENSG00000164266 SPINK1 serine peptidase inhibitor, Kazal type 1 2.3219 0.0001
9 ENSG00000201176 RNU6-853P RNA, U6 small nuclear 853, pseudogene 2.3219 0.0001
10 ENSG00000207260 RNU6-35P RNA, U6 small nuclear 35, pseudogene 2.3219 0.0001
63332 ENSG00000238280 novel transcript -1.7029 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000211575 MIR760 microRNA 760 -1.7104 0.0000
63340 ENSG00000223496 EXOSC6 exosome component 6 -1.7095 0.0000
63339 ENSG00000265366 GLUD1P2 glutamate dehydrogenase 1 pseudogene 2 -1.7085 0.0000
63338 ENSG00000154478 GPR26 G protein-coupled receptor 26 -1.7084 0.0867
63337 ENSG00000121879 PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha -1.7064 0.0008
63336 ENSG00000280436 asparagine synthetase (glutamine-hydrolyzing) (ASNS) pseudogene -1.7058 0.0055
63335 ENSG00000283829 MIR378I microRNA 378i -1.7050 0.0000
63334 ENSG00000207300 NA -1.7048 0.3915
63333 ENSG00000252695 MIR2276 microRNA 2276 -1.7036 0.0000
63332 ENSG00000238280 novel transcript -1.7029 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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