Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481561

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481561


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M34Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000124193 SRSF6 serine and arginine rich splicing factor 6 3.5546 0.0000
2 ENSG00000211578 MIR766 microRNA 766 2.5850 0.0000
3 ENSG00000264391 RN7SL208P RNA, 7SL, cytoplasmic 208, pseudogene 2.5850 0.0000
4 ENSG00000219712 novel serine/threonine kinase pseudogene 2.5401 0.0000
5 ENSG00000269806 BICRA-AS1 BICRA antisense RNA 1 2.4096 0.0000
6 ENSG00000151287 TEX30 testis expressed 30 2.3219 0.0000
7 ENSG00000186212 SOWAHB sosondowah ankyrin repeat domain family member B 2.3219 0.0000
8 ENSG00000199520 RNU6-386P RNA, U6 small nuclear 386, pseudogene 2.3219 0.0000
9 ENSG00000223575 RBMX2P3 RBMX2 pseudogene 3 2.3219 0.0000
10 ENSG00000230589 IMP3P1 IMP3 pseudogene 1 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000260596 DUX4 double homeobox 4 -1.5850 1.0000
63127 ENSG00000260514 ribosomal protein S10 (RPS10) pseudogene -1.5850 1.0000
63126 ENSG00000260495 novel transcript, antisense to GAN -1.5850 1.0000
63125 ENSG00000260480 C2orf69P4 chromosome 2 open reading frame 69 pseudogene 4 -1.5850 1.0000
63124 ENSG00000260472 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) (SUMO2) pseudogene -1.5850 1.0000
63123 ENSG00000260469 INSYN1-AS1 INSYN1 antisense RNA 1 -1.5850 1.0000
63122 ENSG00000259956 RBM15B RNA binding motif protein 15B -1.5850 0.6254
63121 ENSG00000259856 RAB43P1 RAB43 pseudogene 1 -1.5850 1.0000
63120 ENSG00000259827 novel transcript -1.5850 1.0000
63119 ENSG00000259814 novel transcript -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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