SHOGoiN Cell Methylome: GSM2481561

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481561


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M34Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000124193 SRSF6 serine and arginine rich splicing factor 6 3.5546 0.0000
2 ENSG00000211578 MIR766 microRNA 766 2.5850 0.0000
3 ENSG00000264391 RN7SL208P RNA, 7SL, cytoplasmic 208, pseudogene 2.5850 0.0000
4 ENSG00000219712 novel serine/threonine kinase pseudogene 2.5401 0.0000
5 ENSG00000269806 BICRA-AS1 BICRA antisense RNA 1 2.4096 0.0000
6 ENSG00000151287 TEX30 testis expressed 30 2.3219 0.0000
7 ENSG00000186212 SOWAHB sosondowah ankyrin repeat domain family member B 2.3219 0.0000
8 ENSG00000199520 RNU6-386P RNA, U6 small nuclear 386, pseudogene 2.3219 0.0000
9 ENSG00000223575 RBMX2P3 RBMX2 pseudogene 3 2.3219 0.0000
10 ENSG00000230589 IMP3P1 IMP3 pseudogene 1 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000233576 HTR3C2P 5-hydroxytryptamine receptor 3C2, pseudogene -1.6462 1.0000
63340 ENSG00000224192 novel transcript -1.6462 1.0000
63339 ENSG00000099250 NRP1 neuropilin 1 -1.6438 0.1828
63338 ENSG00000241357 novel transcript -1.6437 0.5220
63337 ENSG00000240211 novel transcript -1.6437 0.5220
63336 ENSG00000160813 PPP1R35 protein phosphatase 1 regulatory subunit 35 -1.6437 0.5220
63335 ENSG00000236311 TLX1NB TLX1 neighbor -1.6417 0.4955
63334 ENSG00000189325 C6orf222 chromosome 6 open reading frame 222 -1.6417 1.0000
63333 ENSG00000258778 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa (EIF2S2) pseudogene -1.6410 0.1418
63332 ENSG00000257327 novel transcript -1.6392 0.1167

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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