SHOGoiN Cell Methylome: GSM2481562

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481562


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M35Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259122 TVP23BP1 TVP23B pseudogene 1 2.8074 0.0000
2 ENSG00000118518 RNF146 ring finger protein 146 2.5850 0.0001
3 ENSG00000154839 SKA1 spindle and kinetochore associated complex subunit 1 2.5850 0.0000
4 ENSG00000229473 RGS17P1 regulator of G protein signaling 17 pseudogene 1 2.5850 0.0001
5 ENSG00000234891 novel transcript 2.5850 0.0000
6 ENSG00000263526 MIR378G microRNA 378g 2.5850 0.0001
7 ENSG00000275371 novel transcript, antisense to GDPD3 2.5850 0.0000
8 ENSG00000267264 vomeronasal receptor pseudogene 2.5646 0.0000
9 ENSG00000269846 novel transcript, antisense to RBL1 2.4089 0.0000
10 ENSG00000265407 MIR4324 microRNA 4324 2.4052 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000274381 Ig Lambda chain V-III region pseudogene -2.0000 0.5982
63340 ENSG00000274252 GGTLC3 gamma-glutamyltransferase light chain family member 3 -2.0000 1.0000
63339 ENSG00000274198 novel transcript -2.0000 0.1526
63338 ENSG00000273487 novel transcript -2.0000 0.5982
63337 ENSG00000273407 novel transcript, antisense to CYP3A4 -2.0000 0.5982
63336 ENSG00000272915 novel transcript -2.0000 0.2359
63335 ENSG00000272288 novel transcript, antisense to C6orf106 -2.0000 0.0158
63334 ENSG00000271296 H3 histone family 3 pseudogene -2.0000 1.0000
63333 ENSG00000271249 DIMT1P1 DIM1 dimethyladenosine transferase 1 homolog pseudogene 1 -2.0000 1.0000
63332 ENSG00000266908 novel transcript -2.0000 0.3714

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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