Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481562

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481562


Profile download
7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M35Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259122 TVP23BP1 TVP23B pseudogene 1 2.8074 0.0000
2 ENSG00000118518 RNF146 ring finger protein 146 2.5850 0.0001
3 ENSG00000154839 SKA1 spindle and kinetochore associated complex subunit 1 2.5850 0.0000
4 ENSG00000229473 RGS17P1 regulator of G protein signaling 17 pseudogene 1 2.5850 0.0001
5 ENSG00000234891 novel transcript 2.5850 0.0000
6 ENSG00000263526 MIR378G microRNA 378g 2.5850 0.0001
7 ENSG00000275371 novel transcript, antisense to GDPD3 2.5850 0.0000
8 ENSG00000267264 vomeronasal receptor pseudogene 2.5646 0.0000
9 ENSG00000269846 novel transcript, antisense to RBL1 2.4089 0.0000
10 ENSG00000265407 MIR4324 microRNA 4324 2.4052 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000204261 PSMB8-AS1 PSMB8 antisense RNA 1 (head to head) -1.9425 0.0000
63127 ENSG00000016402 IL20RA interleukin 20 receptor subunit alpha -1.9421 0.0000
63126 ENSG00000280800 novel transcript, similar to YY1 associated myogenesis RNA 1 YAM1 -1.9415 0.0000
63125 ENSG00000278233 RNA5-8SN2 RNA, 5.8S ribosomal N2 -1.9415 0.0000
63124 ENSG00000173011 TADA2B transcriptional adaptor 2B -1.9414 0.0000
63123 ENSG00000270268 CORO1CP1 CORO1C pseudogene 1 -1.9412 0.0007
63122 ENSG00000255624 C10orf88B C10orf88B (pseudogene) -1.9408 0.0000
63121 ENSG00000248578 NPM1P21 nucleophosmin 1 pseudogene 21 -1.9406 0.0589
63120 ENSG00000184378 ACTRT3 actin related protein T3 -1.9400 0.0000
63119 ENSG00000228666 KRT18P1 keratin 18 pseudogene 1 -1.9395 0.0007

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...