Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481563

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481563


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M36Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000125409 TEKT3 tektin 3 2.5850 0.0000
2 ENSG00000276081 MIR7156 microRNA 7156 2.5850 0.0000
3 ENSG00000279554 novel transcript 2.5324 0.0000
4 ENSG00000130193 THEM6 thioesterase superfamily member 6 2.5018 0.0000
5 ENSG00000253741 LNCOC1 lncRNA associated with ovarian cancer 1 2.5018 0.0000
6 ENSG00000253806 novel transcript 2.5018 0.0000
7 ENSG00000250496 ABT1P1 activator of basal transcription 1 pseudogene 1 2.4973 0.0000
8 ENSG00000177300 CLDN22 claudin 22 2.3900 0.0000
9 ENSG00000185758 CLDN24 claudin 24 2.3900 0.0000
10 ENSG00000261351 novel transcript, antisense to MAP2K1 2.3312 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000267352 SH3GL1P3 SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 3 -1.5850 1.0000
63127 ENSG00000267323 SLC25A1P5 solute carrier family 25 member 1 pseudogene 5 -1.5850 1.0000
63126 ENSG00000266968 novel transcript -1.5850 1.0000
63125 ENSG00000266720 RN7SL14P RNA, 7SL, cytoplasmic 14, pseudogene -1.5850 1.0000
63124 ENSG00000266663 MIR3169 microRNA 3169 -1.5850 1.0000
63123 ENSG00000266291 MIR3180-3 microRNA 3180-3 -1.5850 1.0000
63122 ENSG00000265957 MIR4319 microRNA 4319 -1.5850 1.0000
63121 ENSG00000265954 MIR4749 microRNA 4749 -1.5850 1.0000
63120 ENSG00000265894 RN7SL357P RNA, 7SL, cytoplasmic 357, pseudogene -1.5850 0.6230
63119 ENSG00000265888 DSCAS DSC1/DSC2 antisense RNA -1.5850 0.6230

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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