SHOGoiN Cell Methylome: GSM2481563
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481563 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP074598 | SRP074598_M36 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Zygote | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000125409 | TEKT3 | tektin 3 | 2.5850 | 0.0000 |
| 2 | ENSG00000276081 | MIR7156 | microRNA 7156 | 2.5850 | 0.0000 |
| 3 | ENSG00000279554 | novel transcript | 2.5324 | 0.0000 | |
| 4 | ENSG00000130193 | THEM6 | thioesterase superfamily member 6 | 2.5018 | 0.0000 |
| 5 | ENSG00000253741 | LNCOC1 | lncRNA associated with ovarian cancer 1 | 2.5018 | 0.0000 |
| 6 | ENSG00000253806 | novel transcript | 2.5018 | 0.0000 | |
| 7 | ENSG00000250496 | ABT1P1 | activator of basal transcription 1 pseudogene 1 | 2.4973 | 0.0000 |
| 8 | ENSG00000177300 | CLDN22 | claudin 22 | 2.3900 | 0.0000 |
| 9 | ENSG00000185758 | CLDN24 | claudin 24 | 2.3900 | 0.0000 |
| 10 | ENSG00000261351 | novel transcript, antisense to MAP2K1 | 2.3312 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000091664 | SLC17A6 | solute carrier family 17 member 6 | -1.6489 | 0.2715 |
| 63340 | ENSG00000185909 | KLHDC8B | kelch domain containing 8B | -1.6474 | 0.2519 |
| 63339 | ENSG00000183807 | FAM162B | family with sequence similarity 162 member B | -1.6473 | 0.1287 |
| 63338 | ENSG00000249588 | novel transcript | -1.6462 | 1.0000 | |
| 63337 | ENSG00000185483 | ROR1 | receptor tyrosine kinase like orphan receptor 1 | -1.6456 | 0.0006 |
| 63336 | ENSG00000148053 | NTRK2 | neurotrophic receptor tyrosine kinase 2 | -1.6452 | 0.0537 |
| 63335 | ENSG00000137880 | GCHFR | GTP cyclohydrolase I feedback regulator | -1.6448 | 0.4174 |
| 63334 | ENSG00000242953 | pseudogene similar to part of ankyrin repeat domain 36 (ANKRD36) | -1.6443 | 1.0000 | |
| 63333 | ENSG00000204311 | PJVK | pejvakin | -1.6429 | 0.4124 |
| 63332 | ENSG00000159079 | CFAP298 | cilia and flagella associated protein 298 | -1.6429 | 1.0000 |
