Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2481563
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481563
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP074598
SRP074598_M36
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Zygote
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000125409
TEKT3
tektin 3
2.5850
0.0000
2
ENSG00000276081
MIR7156
microRNA 7156
2.5850
0.0000
3
ENSG00000279554
novel transcript
2.5324
0.0000
4
ENSG00000130193
THEM6
thioesterase superfamily member 6
2.5018
0.0000
5
ENSG00000253741
LNCOC1
lncRNA associated with ovarian cancer 1
2.5018
0.0000
6
ENSG00000253806
novel transcript
2.5018
0.0000
7
ENSG00000250496
ABT1P1
activator of basal transcription 1 pseudogene 1
2.4973
0.0000
8
ENSG00000177300
CLDN22
claudin 22
2.3900
0.0000
9
ENSG00000185758
CLDN24
claudin 24
2.3900
0.0000
10
ENSG00000261351
novel transcript, antisense to MAP2K1
2.3312
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000267352
SH3GL1P3
SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 3
-1.5850
1.0000
63127
ENSG00000267323
SLC25A1P5
solute carrier family 25 member 1 pseudogene 5
-1.5850
1.0000
63126
ENSG00000266968
novel transcript
-1.5850
1.0000
63125
ENSG00000266720
RN7SL14P
RNA, 7SL, cytoplasmic 14, pseudogene
-1.5850
1.0000
63124
ENSG00000266663
MIR3169
microRNA 3169
-1.5850
1.0000
63123
ENSG00000266291
MIR3180-3
microRNA 3180-3
-1.5850
1.0000
63122
ENSG00000265957
MIR4319
microRNA 4319
-1.5850
1.0000
63121
ENSG00000265954
MIR4749
microRNA 4749
-1.5850
1.0000
63120
ENSG00000265894
RN7SL357P
RNA, 7SL, cytoplasmic 357, pseudogene
-1.5850
0.6230
63119
ENSG00000265888
DSCAS
DSC1/DSC2 antisense RNA
-1.5850
0.6230
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...
