SHOGoiN Cell Methylome: GSM2481563

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481563


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M36Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000125409 TEKT3 tektin 3 2.5850 0.0000
2 ENSG00000276081 MIR7156 microRNA 7156 2.5850 0.0000
3 ENSG00000279554 novel transcript 2.5324 0.0000
4 ENSG00000130193 THEM6 thioesterase superfamily member 6 2.5018 0.0000
5 ENSG00000253741 LNCOC1 lncRNA associated with ovarian cancer 1 2.5018 0.0000
6 ENSG00000253806 novel transcript 2.5018 0.0000
7 ENSG00000250496 ABT1P1 activator of basal transcription 1 pseudogene 1 2.4973 0.0000
8 ENSG00000177300 CLDN22 claudin 22 2.3900 0.0000
9 ENSG00000185758 CLDN24 claudin 24 2.3900 0.0000
10 ENSG00000261351 novel transcript, antisense to MAP2K1 2.3312 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000091664 SLC17A6 solute carrier family 17 member 6 -1.6489 0.2715
63340 ENSG00000185909 KLHDC8B kelch domain containing 8B -1.6474 0.2519
63339 ENSG00000183807 FAM162B family with sequence similarity 162 member B -1.6473 0.1287
63338 ENSG00000249588 novel transcript -1.6462 1.0000
63337 ENSG00000185483 ROR1 receptor tyrosine kinase like orphan receptor 1 -1.6456 0.0006
63336 ENSG00000148053 NTRK2 neurotrophic receptor tyrosine kinase 2 -1.6452 0.0537
63335 ENSG00000137880 GCHFR GTP cyclohydrolase I feedback regulator -1.6448 0.4174
63334 ENSG00000242953 pseudogene similar to part of ankyrin repeat domain 36 (ANKRD36) -1.6443 1.0000
63333 ENSG00000204311 PJVK pejvakin -1.6429 0.4124
63332 ENSG00000159079 CFAP298 cilia and flagella associated protein 298 -1.6429 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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