Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481564

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481564


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M37Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000128645 HOXD1 homeobox D1 2.8074 0.0000
2 ENSG00000207223 Y RNA 2.8074 0.0000
3 ENSG00000216101 MIR877 microRNA 877 2.8074 0.0000
4 ENSG00000253593 novel transcript 2.8074 0.0000
5 ENSG00000278873 uncharacterized LOC100133319 2.5850 0.0000
6 ENSG00000232252 novel transcript 2.5646 0.0000
7 ENSG00000202141 Y RNA 2.4110 0.0000
8 ENSG00000102158 MAGT1 magnesium transporter 1 2.3219 0.0000
9 ENSG00000163116 STPG2 sperm tail PG-rich repeat containing 2 2.3219 0.0002
10 ENSG00000174928 C3orf33 chromosome 3 open reading frame 33 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000267493 CIRBP-AS1 CIRBP antisense RNA 1 -1.8187 0.0000
63127 ENSG00000185924 RTN4RL1 reticulon 4 receptor like 1 -1.8185 0.0000
63126 ENSG00000153574 RPIA ribose 5-phosphate isomerase A -1.8182 0.0431
63125 ENSG00000110958 PTGES3 prostaglandin E synthase 3 -1.8179 0.0113
63124 ENSG00000116288 PARK7 Parkinsonism associated deglycase -1.8177 0.0000
63123 ENSG00000134326 CMPK2 cytidine/uridine monophosphate kinase 2 -1.8171 0.0000
63122 ENSG00000224424 PRKAR2A-AS1 PRKAR2A antisense RNA 1 -1.8166 0.0000
63121 ENSG00000236333 TRHDE-AS1 TRHDE antisense RNA 1 -1.8160 0.0000
63120 ENSG00000154080 CHST9 carbohydrate sulfotransferase 9 -1.8157 0.0046
63119 ENSG00000235084 CHCHD2P6 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 6 -1.8154 0.0006

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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