SHOGoiN Cell Methylome: GSM2481564
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481564 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP074598 | SRP074598_M37 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Zygote | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000128645 | HOXD1 | homeobox D1 | 2.8074 | 0.0000 |
| 2 | ENSG00000207223 | NA | 2.8074 | 0.0000 | |
| 3 | ENSG00000216101 | MIR877 | microRNA 877 | 2.8074 | 0.0000 |
| 4 | ENSG00000253593 | novel transcript | 2.8074 | 0.0000 | |
| 5 | ENSG00000278873 | TEC | 2.5850 | 0.0000 | |
| 6 | ENSG00000232252 | novel transcript | 2.5646 | 0.0000 | |
| 7 | ENSG00000202141 | NA | 2.4110 | 0.0000 | |
| 8 | ENSG00000102158 | MAGT1 | magnesium transporter 1 | 2.3219 | 0.0000 |
| 9 | ENSG00000163116 | STPG2 | sperm tail PG-rich repeat containing 2 | 2.3219 | 0.0002 |
| 10 | ENSG00000174928 | C3orf33 | chromosome 3 open reading frame 33 | 2.3219 | 0.0002 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000223398 | proline rich 3 (PPR3) pseudogene | -1.9167 | 0.0000 | |
| 63340 | ENSG00000137727 | ARHGAP20 | Rho GTPase activating protein 20 | -1.9161 | 0.0000 |
| 63339 | ENSG00000259565 | KRT8P23 | keratin 8 pseudogene 23 | -1.9157 | 0.0000 |
| 63338 | ENSG00000186081 | KRT5 | keratin 5 | -1.9149 | 0.0003 |
| 63337 | ENSG00000228829 | pseudogene similar to part of GTF2I repeat domain containing 1 GTF2IRD1 | -1.9124 | 0.0000 | |
| 63336 | ENSG00000217442 | SYCE3 | synaptonemal complex central element protein 3 | -1.9123 | 0.0000 |
| 63335 | ENSG00000199092 | MIR410 | microRNA 410 | -1.9121 | 0.0000 |
| 63334 | ENSG00000150051 | MKX | mohawk homeobox | -1.9117 | 0.0000 |
| 63333 | ENSG00000230191 | interferon induced transmembrane protein 3 (1-8U) (IFITM3) pseudogene | -1.9110 | 0.0647 | |
| 63332 | ENSG00000152217 | SETBP1 | SET binding protein 1 | -1.9095 | 0.0000 |
