SHOGoiN Cell Methylome: GSM2481564

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481564


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M37Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000128645 HOXD1 homeobox D1 2.8074 0.0000
2 ENSG00000207223 NA 2.8074 0.0000
3 ENSG00000216101 MIR877 microRNA 877 2.8074 0.0000
4 ENSG00000253593 novel transcript 2.8074 0.0000
5 ENSG00000278873 TEC 2.5850 0.0000
6 ENSG00000232252 novel transcript 2.5646 0.0000
7 ENSG00000202141 NA 2.4110 0.0000
8 ENSG00000102158 MAGT1 magnesium transporter 1 2.3219 0.0000
9 ENSG00000163116 STPG2 sperm tail PG-rich repeat containing 2 2.3219 0.0002
10 ENSG00000174928 C3orf33 chromosome 3 open reading frame 33 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000223398 proline rich 3 (PPR3) pseudogene -1.9167 0.0000
63340 ENSG00000137727 ARHGAP20 Rho GTPase activating protein 20 -1.9161 0.0000
63339 ENSG00000259565 KRT8P23 keratin 8 pseudogene 23 -1.9157 0.0000
63338 ENSG00000186081 KRT5 keratin 5 -1.9149 0.0003
63337 ENSG00000228829 pseudogene similar to part of GTF2I repeat domain containing 1 GTF2IRD1 -1.9124 0.0000
63336 ENSG00000217442 SYCE3 synaptonemal complex central element protein 3 -1.9123 0.0000
63335 ENSG00000199092 MIR410 microRNA 410 -1.9121 0.0000
63334 ENSG00000150051 MKX mohawk homeobox -1.9117 0.0000
63333 ENSG00000230191 interferon induced transmembrane protein 3 (1-8U) (IFITM3) pseudogene -1.9110 0.0647
63332 ENSG00000152217 SETBP1 SET binding protein 1 -1.9095 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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