Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481564
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481564
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP074598
SRP074598_M37
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Zygote
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000128645
HOXD1
homeobox D1
2.8074
0.0000
2
ENSG00000207223
Y RNA
2.8074
0.0000
3
ENSG00000216101
MIR877
microRNA 877
2.8074
0.0000
4
ENSG00000253593
novel transcript
2.8074
0.0000
5
ENSG00000278873
uncharacterized LOC100133319
2.5850
0.0000
6
ENSG00000232252
novel transcript
2.5646
0.0000
7
ENSG00000202141
Y RNA
2.4110
0.0000
8
ENSG00000102158
MAGT1
magnesium transporter 1
2.3219
0.0000
9
ENSG00000163116
STPG2
sperm tail PG-rich repeat containing 2
2.3219
0.0002
10
ENSG00000174928
C3orf33
chromosome 3 open reading frame 33
2.3219
0.0002
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000267493
CIRBP-AS1
CIRBP antisense RNA 1
-1.8187
0.0000
63127
ENSG00000185924
RTN4RL1
reticulon 4 receptor like 1
-1.8185
0.0000
63126
ENSG00000153574
RPIA
ribose 5-phosphate isomerase A
-1.8182
0.0431
63125
ENSG00000110958
PTGES3
prostaglandin E synthase 3
-1.8179
0.0113
63124
ENSG00000116288
PARK7
Parkinsonism associated deglycase
-1.8177
0.0000
63123
ENSG00000134326
CMPK2
cytidine/uridine monophosphate kinase 2
-1.8171
0.0000
63122
ENSG00000224424
PRKAR2A-AS1
PRKAR2A antisense RNA 1
-1.8166
0.0000
63121
ENSG00000236333
TRHDE-AS1
TRHDE antisense RNA 1
-1.8160
0.0000
63120
ENSG00000154080
CHST9
carbohydrate sulfotransferase 9
-1.8157
0.0046
63119
ENSG00000235084
CHCHD2P6
coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 6
-1.8154
0.0006
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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