Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481565

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481565


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M38Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000227602 novel transcript 2.5850 0.0000
2 ENSG00000160229 ZNF66 zinc finger protein 66 2.3219 0.0000
3 ENSG00000163104 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 2.3219 0.0000
4 ENSG00000234382 acyl-CoA synthetase medium-chain family member 1 (ACSM1) pseudogene 2.3219 0.0000
5 ENSG00000246541 novel transcript 2.3219 0.0000
6 ENSG00000253414 long intergenic non-protein coding RNA 1605 2.3219 0.0000
7 ENSG00000274450 NA 2.3219 0.0000
8 ENSG00000232828 novel transcript 2.1230 0.0000
9 ENSG00000005471 ABCB4 ATP binding cassette subfamily B member 4 2.0000 0.0000
10 ENSG00000092140 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2.0000 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000237343 novel transcript -1.5850 0.6306
63127 ENSG00000237282 LINC00851 long intergenic non-protein coding RNA 851 -1.5850 1.0000
63126 ENSG00000237220 novel transcript -1.5850 1.0000
63125 ENSG00000237121 PIEZO1P2 piezo type mechanosensitive ion channel component 1 pseudogene 2 -1.5850 1.0000
63124 ENSG00000237039 RPS28P4 ribosomal protein S28 pseudogene 4 -1.5850 1.0000
63123 ENSG00000236946 HNRNPA1P70 heterogeneous nuclear ribonucleoprotein A1 pseudogene 70 -1.5850 1.0000
63122 ENSG00000236919 PHKG1P3 phosphorylase kinase catalytic subunit gamma 1 pseudogene 3 -1.5850 1.0000
63121 ENSG00000236838 novel transcript, antisense to SMG6 -1.5850 1.0000
63120 ENSG00000236641 novel transcript -1.5850 1.0000
63119 ENSG00000236555 axin 2 (conductin, axil) (AXIN2) pseudogene -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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