Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481565
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481565
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP074598
SRP074598_M38
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Zygote
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000227602
novel transcript
2.5850
0.0000
2
ENSG00000160229
ZNF66
zinc finger protein 66
2.3219
0.0000
3
ENSG00000163104
SMARCAD1
SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
2.3219
0.0000
4
ENSG00000234382
acyl-CoA synthetase medium-chain family member 1 (ACSM1) pseudogene
2.3219
0.0000
5
ENSG00000246541
novel transcript
2.3219
0.0000
6
ENSG00000253414
long intergenic non-protein coding RNA 1605
2.3219
0.0000
7
ENSG00000274450
NA
2.3219
0.0000
8
ENSG00000232828
novel transcript
2.1230
0.0000
9
ENSG00000005471
ABCB4
ATP binding cassette subfamily B member 4
2.0000
0.0000
10
ENSG00000092140
G2E3
G2/M-phase specific E3 ubiquitin protein ligase
2.0000
0.0001
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000237343
novel transcript
-1.5850
0.6306
63127
ENSG00000237282
LINC00851
long intergenic non-protein coding RNA 851
-1.5850
1.0000
63126
ENSG00000237220
novel transcript
-1.5850
1.0000
63125
ENSG00000237121
PIEZO1P2
piezo type mechanosensitive ion channel component 1 pseudogene 2
-1.5850
1.0000
63124
ENSG00000237039
RPS28P4
ribosomal protein S28 pseudogene 4
-1.5850
1.0000
63123
ENSG00000236946
HNRNPA1P70
heterogeneous nuclear ribonucleoprotein A1 pseudogene 70
-1.5850
1.0000
63122
ENSG00000236919
PHKG1P3
phosphorylase kinase catalytic subunit gamma 1 pseudogene 3
-1.5850
1.0000
63121
ENSG00000236838
novel transcript, antisense to SMG6
-1.5850
1.0000
63120
ENSG00000236641
novel transcript
-1.5850
1.0000
63119
ENSG00000236555
axin 2 (conductin, axil) (AXIN2) pseudogene
-1.5850
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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