Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481565

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481565 Profile download	7010000000000000000000-769	Sequence Read Archive	SRP074598	SRP074598_M38	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Zygote	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000227602		novel transcript	2.5850	0.0000
2	ENSG00000160229	ZNF66	zinc finger protein 66	2.3219	0.0000
3	ENSG00000163104	SMARCAD1	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	2.3219	0.0000
4	ENSG00000234382		acyl-CoA synthetase medium-chain family member 1 (ACSM1) pseudogene	2.3219	0.0000
5	ENSG00000246541		novel transcript	2.3219	0.0000
6	ENSG00000253414		long intergenic non-protein coding RNA 1605	2.3219	0.0000
7	ENSG00000274450		NA	2.3219	0.0000
8	ENSG00000232828		novel transcript	2.1230	0.0000
9	ENSG00000005471	ABCB4	ATP binding cassette subfamily B member 4	2.0000	0.0000
10	ENSG00000092140	G2E3	G2/M-phase specific E3 ubiquitin protein ligase	2.0000	0.0001

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000237343		novel transcript	-1.5850	0.6306
63127	ENSG00000237282	LINC00851	long intergenic non-protein coding RNA 851	-1.5850	1.0000
63126	ENSG00000237220		novel transcript	-1.5850	1.0000
63125	ENSG00000237121	PIEZO1P2	piezo type mechanosensitive ion channel component 1 pseudogene 2	-1.5850	1.0000
63124	ENSG00000237039	RPS28P4	ribosomal protein S28 pseudogene 4	-1.5850	1.0000
63123	ENSG00000236946	HNRNPA1P70	heterogeneous nuclear ribonucleoprotein A1 pseudogene 70	-1.5850	1.0000
63122	ENSG00000236919	PHKG1P3	phosphorylase kinase catalytic subunit gamma 1 pseudogene 3	-1.5850	1.0000
63121	ENSG00000236838		novel transcript, antisense to SMG6	-1.5850	1.0000
63120	ENSG00000236641		novel transcript	-1.5850	1.0000
63119	ENSG00000236555		axin 2 (conductin, axil) (AXIN2) pseudogene	-1.5850	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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