SHOGoiN Cell Methylome: GSM2481565

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481565


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M38Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000227602 novel transcript 2.5850 0.0000
2 ENSG00000160229 ZNF66 zinc finger protein 66 2.3219 0.0000
3 ENSG00000163104 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 2.3219 0.0000
4 ENSG00000234382 acyl-CoA synthetase medium-chain family member 1 (ACSM1) pseudogene 2.3219 0.0000
5 ENSG00000246541 novel transcript 2.3219 0.0000
6 ENSG00000253414 novel transcript 2.3219 0.0000
7 ENSG00000274450 NA 2.3219 0.0000
8 ENSG00000232828 novel transcript 2.1230 0.0000
9 ENSG00000005471 ABCB4 ATP binding cassette subfamily B member 4 2.0000 0.0000
10 ENSG00000092140 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2.0000 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000269814 novel transcript -1.5850 1.0000
63340 ENSG00000269635 novel transcript -1.5850 1.0000
63339 ENSG00000269553 novel transcript -1.5850 1.0000
63338 ENSG00000269364 LINC01233 long intergenic non-protein coding RNA 1233 -1.5850 1.0000
63337 ENSG00000268582 phosphodiesterase 7 pseudogene -1.5850 1.0000
63336 ENSG00000267882 novel transcript, antisense to ZMYND8 -1.5850 1.0000
63335 ENSG00000267809 NDUFV2P1 NADH:ubiquinone oxidoreductase core subunit V2 pseudogene 1 -1.5850 0.4034
63334 ENSG00000267772 LINC01999 long intergenic non-protein coding RNA 1999 -1.5850 1.0000
63333 ENSG00000267757 EML2-AS1 EML2 antisense RNA 1 -1.5850 1.0000
63332 ENSG00000267725 ribosomal protein S26 (RPS26) pseudogene -1.5850 0.6268

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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