SHOGoiN Cell Methylome: GSM2481565
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481565 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP074598 | SRP074598_M38 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Zygote | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000227602 | novel transcript | 2.5850 | 0.0000 | |
| 2 | ENSG00000160229 | ZNF66 | zinc finger protein 66 | 2.3219 | 0.0000 |
| 3 | ENSG00000163104 | SMARCAD1 | SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 | 2.3219 | 0.0000 |
| 4 | ENSG00000234382 | acyl-CoA synthetase medium-chain family member 1 (ACSM1) pseudogene | 2.3219 | 0.0000 | |
| 5 | ENSG00000246541 | novel transcript | 2.3219 | 0.0000 | |
| 6 | ENSG00000253414 | novel transcript | 2.3219 | 0.0000 | |
| 7 | ENSG00000274450 | NA | 2.3219 | 0.0000 | |
| 8 | ENSG00000232828 | novel transcript | 2.1230 | 0.0000 | |
| 9 | ENSG00000005471 | ABCB4 | ATP binding cassette subfamily B member 4 | 2.0000 | 0.0000 |
| 10 | ENSG00000092140 | G2E3 | G2/M-phase specific E3 ubiquitin protein ligase | 2.0000 | 0.0001 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000269814 | novel transcript | -1.5850 | 1.0000 | |
| 63340 | ENSG00000269635 | novel transcript | -1.5850 | 1.0000 | |
| 63339 | ENSG00000269553 | novel transcript | -1.5850 | 1.0000 | |
| 63338 | ENSG00000269364 | LINC01233 | long intergenic non-protein coding RNA 1233 | -1.5850 | 1.0000 |
| 63337 | ENSG00000268582 | phosphodiesterase 7 pseudogene | -1.5850 | 1.0000 | |
| 63336 | ENSG00000267882 | novel transcript, antisense to ZMYND8 | -1.5850 | 1.0000 | |
| 63335 | ENSG00000267809 | NDUFV2P1 | NADH:ubiquinone oxidoreductase core subunit V2 pseudogene 1 | -1.5850 | 0.4034 |
| 63334 | ENSG00000267772 | LINC01999 | long intergenic non-protein coding RNA 1999 | -1.5850 | 1.0000 |
| 63333 | ENSG00000267757 | EML2-AS1 | EML2 antisense RNA 1 | -1.5850 | 1.0000 |
| 63332 | ENSG00000267725 | ribosomal protein S26 (RPS26) pseudogene | -1.5850 | 0.6268 |
