Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481566

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481566


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M39Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000258039 novel transcript, antisense & intronic to ANKS1B 2.8074 0.0000
2 ENSG00000276667 CDC-like kinase 3 (CLK3) pseudogene 2.7582 0.0000
3 ENSG00000235064 SLC25A5P2 solute carrier family 25 member 5 pseudogene 2 2.7468 0.0000
4 ENSG00000077498 TYR tyrosinase 2.5850 0.0007
5 ENSG00000187026 KRTAP21-2 keratin associated protein 21-2 2.5850 0.0007
6 ENSG00000213754 KPNA4P1 KPNA4 pseudogene 1 2.5850 0.0007
7 ENSG00000226358 KRT8P38 keratin 8 pseudogene 38 2.5850 0.0000
8 ENSG00000236400 KRTAP21-4P keratin associated protein 21-4, pseudogene 2.5850 0.0007
9 ENSG00000237139 RPS26P41 ribosomal protein S26 pseudogene 41 2.5850 0.0007
10 ENSG00000257823 necdin homolog (mouse) (NDN) pseudogene 2.5850 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000164488 DACT2 dishevelled binding antagonist of beta catenin 2 -1.8730 0.0000
63127 ENSG00000231382 NBPF21P NBPF member 21, pseudogene -1.8723 0.0000
63126 ENSG00000187123 LYPD6 LY6/PLAUR domain containing 6 -1.8719 0.0000
63125 ENSG00000110092 CCND1 cyclin D1 -1.8714 0.0000
63124 ENSG00000261469 novel transcript, sense intronic to ESRP2 -1.8712 0.0000
63123 ENSG00000277749 novel transcript, antisense to CCDC33 -1.8710 0.0000
63122 ENSG00000174145 NWD2 NACHT and WD repeat domain containing 2 -1.8702 0.0000
63121 ENSG00000268996 MAN1B1-DT MAN1B1 divergent transcript -1.8698 0.0000
63120 ENSG00000279151 novel transcript -1.8696 0.0000
63119 ENSG00000261356 RAB31, member RAS oncogene family (RAB31) pseudogene -1.8693 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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