SHOGoiN Cell Methylome: GSM2481566

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481566


Profile download
7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M39Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000258039 novel transcript, antisense & intronic to ANKS1B 2.8074 0.0000
2 ENSG00000276667 CDC-like kinase 3 (CLK3) pseudogene 2.7582 0.0000
3 ENSG00000235064 SLC25A5P2 solute carrier family 25 member 5 pseudogene 2 2.7468 0.0000
4 ENSG00000077498 TYR tyrosinase 2.5850 0.0007
5 ENSG00000187026 KRTAP21-2 keratin associated protein 21-2 2.5850 0.0007
6 ENSG00000213754 karyopherin alpha 4 (importin alpha 3) (KPNA4) pseudogene 2.5850 0.0007
7 ENSG00000226358 KRT8P38 keratin 8 pseudogene 38 2.5850 0.0000
8 ENSG00000236400 KRTAP21-4P keratin associated protein 21-4, pseudogene 2.5850 0.0007
9 ENSG00000237139 RPS26P41 ribosomal protein S26 pseudogene 41 2.5850 0.0007
10 ENSG00000257823 necdin homolog (mouse) (NDN) pseudogene 2.5850 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000172458 IL17D interleukin 17D -1.9861 0.0000
63340 ENSG00000257582 LINC01475 long intergenic non-protein coding RNA 1475 -1.9854 0.0000
63339 ENSG00000261558 LINC01859 long intergenic non-protein coding RNA 1859 -1.9850 0.0323
63338 ENSG00000230424 EMC1-AS1 EMC1 antisense RNA 1 -1.9826 0.0000
63337 ENSG00000276210 LINC00226 long intergenic non-protein coding RNA 226 -1.9822 0.0000
63336 ENSG00000167196 FBXO22 F-box protein 22 -1.9822 0.0000
63335 ENSG00000164620 RELL2 RELT like 2 -1.9819 0.0000
63334 ENSG00000234438 KBTBD13 kelch repeat and BTB domain containing 13 -1.9799 0.0000
63333 ENSG00000271551 novel transcript, antisense to ARID1B -1.9790 0.0000
63332 ENSG00000277881 YTH domain family, member 1 (YTHDF1) pseudogene -1.9788 0.0117

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...