Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481567

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481567


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M40Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206998 Y RNA 2.7279 0.0000
2 ENSG00000199598 RNU6-859P RNA, U6 small nuclear 859, pseudogene 2.5850 0.0000
3 ENSG00000221910 OR2F2 olfactory receptor family 2 subfamily F member 2 2.5850 0.0000
4 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5850 0.0000
5 ENSG00000283653 novel ovomucoid-like pseudogene 2.5850 0.0000
6 ENSG00000054983 GALC galactosylceramidase 2.3658 0.0000
7 ENSG00000177570 SAMD12 sterile alpha motif domain containing 12 2.3219 0.0000
8 ENSG00000213279 novel transcript 2.3219 0.0000
9 ENSG00000213370 RANP6 RAN pseudogene 6 2.3219 0.0000
10 ENSG00000224394 GPC6-AS2 GPC6 antisense RNA 2 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000263588 novel transcript -1.5850 1.0000
63127 ENSG00000263537 RN7SL387P RNA, 7SL, cytoplasmic 387, pseudogene -1.5850 1.0000
63126 ENSG00000263400 TMEM220-AS1 TMEM220 antisense RNA 1 -1.5850 1.0000
63125 ENSG00000263354 MIR5011 microRNA 5011 -1.5850 1.0000
63124 ENSG00000262185 LINC02861 long intergenic non-protein coding RNA 2861 -1.5850 1.0000
63123 ENSG00000261864 novel transcript -1.5850 1.0000
63122 ENSG00000261559 FSCN1P1 fascin actin-bundling protein 1 pseudogene 1 -1.5850 1.0000
63121 ENSG00000261478 novel transcript -1.5850 1.0000
63120 ENSG00000261429 DPPA2P4 developmental pluripotency associated 2 pseudogene 4 -1.5850 1.0000
63119 ENSG00000261404 PSMD7-DT PSMD7 divergent transcript -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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