SHOGoiN Cell Methylome: GSM2481567

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481567


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M40Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206998 NA 2.7279 0.0000
2 ENSG00000199598 RNU6-859P RNA, U6 small nuclear 859, pseudogene 2.5850 0.0000
3 ENSG00000221910 OR2F2 olfactory receptor family 2 subfamily F member 2 2.5850 0.0000
4 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5850 0.0000
5 ENSG00000283653 novel ovomucoid-like pseudogene 2.5850 0.0000
6 ENSG00000054983 GALC galactosylceramidase 2.3658 0.0000
7 ENSG00000177570 SAMD12 sterile alpha motif domain containing 12 2.3219 0.0000
8 ENSG00000213279 novel transcript 2.3219 0.0000
9 ENSG00000213370 RANP6 RAN pseudogene 6 2.3219 0.0000
10 ENSG00000224394 GPC6-AS2 GPC6 antisense RNA 2 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000268049 novel transcript, antisense to ZNF497 -1.6444 0.1435
63340 ENSG00000236609 ZNF853 zinc finger protein 853 -1.6429 0.6278
63339 ENSG00000223709 TRIM64EP tripartite motif containing 64E, pseudogene -1.6422 0.0556
63338 ENSG00000135454 B4GALNT1 beta-1,4-N-acetyl-galactosaminyltransferase 1 -1.6413 0.5939
63337 ENSG00000203727 SAMD5 sterile alpha motif domain containing 5 -1.6411 0.8240
63336 ENSG00000135976 ANKRD36 ankyrin repeat domain 36 -1.6402 0.7787
63335 ENSG00000135925 WNT10A Wnt family member 10A -1.6379 0.0073
63334 ENSG00000280800 novel transcript, similar to YY1 associated myogenesis RNA 1 YAM1 -1.6376 0.0000
63333 ENSG00000278233 RNA5-8SN2 RNA, 5.8S ribosomal N2 -1.6376 0.0000
63332 ENSG00000283138 novel transcript, antisense to EFCAB4B -1.6364 0.1020

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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