Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2481567
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481567
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP074598
SRP074598_M40
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Zygote
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000206998
Y RNA
2.7279
0.0000
2
ENSG00000199598
RNU6-859P
RNA, U6 small nuclear 859, pseudogene
2.5850
0.0000
3
ENSG00000221910
OR2F2
olfactory receptor family 2 subfamily F member 2
2.5850
0.0000
4
ENSG00000243593
LINC02049
long intergenic non-protein coding RNA 2049
2.5850
0.0000
5
ENSG00000283653
novel ovomucoid-like pseudogene
2.5850
0.0000
6
ENSG00000054983
GALC
galactosylceramidase
2.3658
0.0000
7
ENSG00000177570
SAMD12
sterile alpha motif domain containing 12
2.3219
0.0000
8
ENSG00000213279
novel transcript
2.3219
0.0000
9
ENSG00000213370
RANP6
RAN pseudogene 6
2.3219
0.0000
10
ENSG00000224394
GPC6-AS2
GPC6 antisense RNA 2
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000263588
novel transcript
-1.5850
1.0000
63127
ENSG00000263537
RN7SL387P
RNA, 7SL, cytoplasmic 387, pseudogene
-1.5850
1.0000
63126
ENSG00000263400
TMEM220-AS1
TMEM220 antisense RNA 1
-1.5850
1.0000
63125
ENSG00000263354
MIR5011
microRNA 5011
-1.5850
1.0000
63124
ENSG00000262185
LINC02861
long intergenic non-protein coding RNA 2861
-1.5850
1.0000
63123
ENSG00000261864
novel transcript
-1.5850
1.0000
63122
ENSG00000261559
FSCN1P1
fascin actin-bundling protein 1 pseudogene 1
-1.5850
1.0000
63121
ENSG00000261478
novel transcript
-1.5850
1.0000
63120
ENSG00000261429
DPPA2P4
developmental pluripotency associated 2 pseudogene 4
-1.5850
1.0000
63119
ENSG00000261404
PSMD7-DT
PSMD7 divergent transcript
-1.5850
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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