SHOGoiN Cell Methylome: GSM2481567
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481567 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP074598 | SRP074598_M40 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Zygote | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000206998 | NA | 2.7279 | 0.0000 | |
| 2 | ENSG00000199598 | RNU6-859P | RNA, U6 small nuclear 859, pseudogene | 2.5850 | 0.0000 |
| 3 | ENSG00000221910 | OR2F2 | olfactory receptor family 2 subfamily F member 2 | 2.5850 | 0.0000 |
| 4 | ENSG00000243593 | LINC02049 | long intergenic non-protein coding RNA 2049 | 2.5850 | 0.0000 |
| 5 | ENSG00000283653 | novel ovomucoid-like pseudogene | 2.5850 | 0.0000 | |
| 6 | ENSG00000054983 | GALC | galactosylceramidase | 2.3658 | 0.0000 |
| 7 | ENSG00000177570 | SAMD12 | sterile alpha motif domain containing 12 | 2.3219 | 0.0000 |
| 8 | ENSG00000213279 | novel transcript | 2.3219 | 0.0000 | |
| 9 | ENSG00000213370 | RANP6 | RAN pseudogene 6 | 2.3219 | 0.0000 |
| 10 | ENSG00000224394 | GPC6-AS2 | GPC6 antisense RNA 2 | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000268049 | novel transcript, antisense to ZNF497 | -1.6444 | 0.1435 | |
| 63340 | ENSG00000236609 | ZNF853 | zinc finger protein 853 | -1.6429 | 0.6278 |
| 63339 | ENSG00000223709 | TRIM64EP | tripartite motif containing 64E, pseudogene | -1.6422 | 0.0556 |
| 63338 | ENSG00000135454 | B4GALNT1 | beta-1,4-N-acetyl-galactosaminyltransferase 1 | -1.6413 | 0.5939 |
| 63337 | ENSG00000203727 | SAMD5 | sterile alpha motif domain containing 5 | -1.6411 | 0.8240 |
| 63336 | ENSG00000135976 | ANKRD36 | ankyrin repeat domain 36 | -1.6402 | 0.7787 |
| 63335 | ENSG00000135925 | WNT10A | Wnt family member 10A | -1.6379 | 0.0073 |
| 63334 | ENSG00000280800 | novel transcript, similar to YY1 associated myogenesis RNA 1 YAM1 | -1.6376 | 0.0000 | |
| 63333 | ENSG00000278233 | RNA5-8SN2 | RNA, 5.8S ribosomal N2 | -1.6376 | 0.0000 |
| 63332 | ENSG00000283138 | novel transcript, antisense to EFCAB4B | -1.6364 | 0.1020 |
