SHOGoiN Cell Methylome: GSM2481568

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481568


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7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M41Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000277549 phosphoglycerate mutase 1 (brain) (PGAM1) pseudogene 2.8074 0.0000
2 ENSG00000226318 RPS3AP38 ribosomal protein S3a pseudogene 38 2.5850 0.0000
3 ENSG00000207628 MIR651 microRNA 651 2.3219 0.0002
4 ENSG00000225037 EIF1AX-AS1 EIF1AX antisense RNA 1 2.3219 0.0002
5 ENSG00000230769 riboflavin kinase (RFK) pseudogene 2.3219 0.0002
6 ENSG00000239471 RN7SL584P RNA, 7SL, cytoplasmic 584, pseudogene 2.3219 0.0000
7 ENSG00000240271 ribosomal protein L29 (RPL29) pseudogene 2.3219 0.0000
8 ENSG00000252282 RNU6-1089P RNA, U6 small nuclear 1089, pseudogene 2.3219 0.0000
9 ENSG00000253385 novel transcript 2.3219 0.0000
10 ENSG00000271278 ELOCP33 elongin C pseudogene 33 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000259776 novel transcript -1.5850 1.0000
63340 ENSG00000259719 LINC02284 long intergenic non-protein coding RNA 2284 -1.5850 0.3824
63339 ENSG00000259631 novel transcript -1.5850 1.0000
63338 ENSG00000259582 novel transcript -1.5850 0.6079
63337 ENSG00000259483 novel transcript -1.5850 0.3824
63336 ENSG00000259271 ANKRD62P1 ankyrin repeat domain 62 pseudogene 1 -1.5850 0.6191
63335 ENSG00000259042 novel transcript -1.5850 0.6191
63334 ENSG00000258810 novel transcript, antisense to RNASE1 -1.5850 1.0000
63333 ENSG00000258722 CKAP2P1 cytoskeleton associated protein 2 pseudogene 1 -1.5850 0.0078
63332 ENSG00000258487 LINC02277 long intergenic non-protein coding RNA 2277 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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