SHOGoiN Cell Methylome: GSM2481568
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481568 Profile download | 7180101000000000000000-755 | Sequence Read Archive | SRP074598 | SRP074598_M41 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | GV oocyte | Human | Genitalia | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000277549 | phosphoglycerate mutase 1 (brain) (PGAM1) pseudogene | 2.8074 | 0.0000 | |
| 2 | ENSG00000226318 | RPS3AP38 | ribosomal protein S3a pseudogene 38 | 2.5850 | 0.0000 |
| 3 | ENSG00000207628 | MIR651 | microRNA 651 | 2.3219 | 0.0002 |
| 4 | ENSG00000225037 | EIF1AX-AS1 | EIF1AX antisense RNA 1 | 2.3219 | 0.0002 |
| 5 | ENSG00000230769 | riboflavin kinase (RFK) pseudogene | 2.3219 | 0.0002 | |
| 6 | ENSG00000239471 | RN7SL584P | RNA, 7SL, cytoplasmic 584, pseudogene | 2.3219 | 0.0000 |
| 7 | ENSG00000240271 | ribosomal protein L29 (RPL29) pseudogene | 2.3219 | 0.0000 | |
| 8 | ENSG00000252282 | RNU6-1089P | RNA, U6 small nuclear 1089, pseudogene | 2.3219 | 0.0000 |
| 9 | ENSG00000253385 | novel transcript | 2.3219 | 0.0000 | |
| 10 | ENSG00000271278 | ELOCP33 | elongin C pseudogene 33 | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000259776 | novel transcript | -1.5850 | 1.0000 | |
| 63340 | ENSG00000259719 | LINC02284 | long intergenic non-protein coding RNA 2284 | -1.5850 | 0.3824 |
| 63339 | ENSG00000259631 | novel transcript | -1.5850 | 1.0000 | |
| 63338 | ENSG00000259582 | novel transcript | -1.5850 | 0.6079 | |
| 63337 | ENSG00000259483 | novel transcript | -1.5850 | 0.3824 | |
| 63336 | ENSG00000259271 | ANKRD62P1 | ankyrin repeat domain 62 pseudogene 1 | -1.5850 | 0.6191 |
| 63335 | ENSG00000259042 | novel transcript | -1.5850 | 0.6191 | |
| 63334 | ENSG00000258810 | novel transcript, antisense to RNASE1 | -1.5850 | 1.0000 | |
| 63333 | ENSG00000258722 | CKAP2P1 | cytoskeleton associated protein 2 pseudogene 1 | -1.5850 | 0.0078 |
| 63332 | ENSG00000258487 | LINC02277 | long intergenic non-protein coding RNA 2277 | -1.5850 | 1.0000 |
