Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481568

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481568


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7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M41Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000277549 phosphoglycerate mutase 1 (brain) (PGAM1) pseudogene 2.8074 0.0000
2 ENSG00000226318 RPS3AP38 RPS3A pseudogene 38 2.5850 0.0000
3 ENSG00000207628 MIR651 microRNA 651 2.3219 0.0002
4 ENSG00000225037 EIF1AX-AS1 EIF1AX antisense RNA 1 2.3219 0.0002
5 ENSG00000230769 riboflavin kinase (RFK) pseudogene 2.3219 0.0002
6 ENSG00000239471 RN7SL584P RNA, 7SL, cytoplasmic 584, pseudogene 2.3219 0.0000
7 ENSG00000240271 ribosomal protein L29 (RPL29) pseudogene 2.3219 0.0000
8 ENSG00000252282 RNU6-1089P RNA, U6 small nuclear 1089, pseudogene 2.3219 0.0000
9 ENSG00000253385 novel transcript 2.3219 0.0000
10 ENSG00000271278 ELOCP33 elongin C pseudogene 33 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000199780 Y RNA -1.5850 1.0000
63127 ENSG00000199705 Y RNA -1.5850 1.0000
63126 ENSG00000199698 Y RNA -1.5850 1.0000
63125 ENSG00000199633 Small nucleolar RNA SNORA63 -1.5850 1.0000
63124 ENSG00000199593 SNORD114-14 small nucleolar RNA, C/D box 114-14 -1.5850 1.0000
63123 ENSG00000199475 RN7SKP104 RN7SK pseudogene 104 -1.5850 1.0000
63122 ENSG00000199251 RNU6-664P RNA, U6 small nuclear 664, pseudogene -1.5850 0.6079
63121 ENSG00000198703 OR10R3P olfactory receptor family 10 subfamily R member 3 pseudogene -1.5850 1.0000
63120 ENSG00000198522 GPN1 GPN-loop GTPase 1 -1.5850 0.0702
63119 ENSG00000198022 SAGE2P sarcoma antigen 2, pseudogene -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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