Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2481568
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481568
Profile download
7180101000000000000000-755
Sequence Read Archive
SRP074598
SRP074598_M41
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
GV oocyte
Human
Genitalia
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000277549
phosphoglycerate mutase 1 (brain) (PGAM1) pseudogene
2.8074
0.0000
2
ENSG00000226318
RPS3AP38
RPS3A pseudogene 38
2.5850
0.0000
3
ENSG00000207628
MIR651
microRNA 651
2.3219
0.0002
4
ENSG00000225037
EIF1AX-AS1
EIF1AX antisense RNA 1
2.3219
0.0002
5
ENSG00000230769
riboflavin kinase (RFK) pseudogene
2.3219
0.0002
6
ENSG00000239471
RN7SL584P
RNA, 7SL, cytoplasmic 584, pseudogene
2.3219
0.0000
7
ENSG00000240271
ribosomal protein L29 (RPL29) pseudogene
2.3219
0.0000
8
ENSG00000252282
RNU6-1089P
RNA, U6 small nuclear 1089, pseudogene
2.3219
0.0000
9
ENSG00000253385
novel transcript
2.3219
0.0000
10
ENSG00000271278
ELOCP33
elongin C pseudogene 33
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000199780
Y RNA
-1.5850
1.0000
63127
ENSG00000199705
Y RNA
-1.5850
1.0000
63126
ENSG00000199698
Y RNA
-1.5850
1.0000
63125
ENSG00000199633
Small nucleolar RNA SNORA63
-1.5850
1.0000
63124
ENSG00000199593
SNORD114-14
small nucleolar RNA, C/D box 114-14
-1.5850
1.0000
63123
ENSG00000199475
RN7SKP104
RN7SK pseudogene 104
-1.5850
1.0000
63122
ENSG00000199251
RNU6-664P
RNA, U6 small nuclear 664, pseudogene
-1.5850
0.6079
63121
ENSG00000198703
OR10R3P
olfactory receptor family 10 subfamily R member 3 pseudogene
-1.5850
1.0000
63120
ENSG00000198522
GPN1
GPN-loop GTPase 1
-1.5850
0.0702
63119
ENSG00000198022
SAGE2P
sarcoma antigen 2, pseudogene
-1.5850
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...
