Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481569

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481569


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7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M42Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000279814 TEC 2.9037 0.0000
2 ENSG00000169252 ADRB2 adrenoceptor beta 2 2.5850 0.0000
3 ENSG00000203710 CR1 complement C3b/C4b receptor 1 (Knops blood group) 2.5850 0.0000
4 ENSG00000225779 novel pseudogene 2.5850 0.0000
5 ENSG00000277876 myoneurin (MYNN) pseudogene 2.5850 0.0000
6 ENSG00000254456 LINC02699 long intergenic non-protein coding RNA 2699 2.4973 0.0000
7 ENSG00000108958 succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa (SDHC) pseudogene 2.3219 0.0000
8 ENSG00000196812 ZSCAN16 zinc finger and SCAN domain containing 16 2.3219 0.0001
9 ENSG00000214265 novel protein 2.3219 0.0000
10 ENSG00000227339 THRAP3P1 THRAP3 pseudogene 1 2.3219 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000226025 galectin 14 pseudogene -1.5850 1.0000
63127 ENSG00000226020 CDK2AP2P3 cyclin dependent kinase 2 associated protein 2 pseudogene 3 -1.5850 0.4026
63126 ENSG00000225945 novel transcript -1.5850 1.0000
63125 ENSG00000225846 ribosomal protein L36 (RPL36) pseudogene -1.5850 0.6287
63124 ENSG00000225535 LINC01393 long intergenic non-protein coding RNA 1393 -1.5850 1.0000
63123 ENSG00000225108 ZBTB45P1 zinc finger and BTB domain containing 45 pseudogene 1 -1.5850 1.0000
63122 ENSG00000225058 novel transcript -1.5850 1.0000
63121 ENSG00000224922 novel transcript -1.5850 0.6132
63120 ENSG00000224675 novel transcript -1.5850 1.0000
63119 ENSG00000224610 novel transcript -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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