Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481570
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481570
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP074598
SRP074598_M43
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Metaphase II oocyte
Human
Genitalia
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000163793
DNAJC5G
DnaJ heat shock protein family (Hsp40) member C5 gamma
2.8074
0.0000
2
ENSG00000265623
MIR3139
microRNA 3139
2.8074
0.0000
3
ENSG00000145949
MYLK4
myosin light chain kinase family member 4
2.5850
0.0000
4
ENSG00000206982
Y RNA
2.5850
0.0000
5
ENSG00000213130
EEF1DP5
eukaryotic translation elongation factor 1 delta pseudogene 5
2.5850
0.0000
6
ENSG00000233971
RPS20P10
ribosomal protein S20 pseudogene 10
2.5850
0.0000
7
ENSG00000248139
CUL4AP1
cullin 4A pseudogene 1
2.5850
0.0000
8
ENSG00000200183
RNU6-238P
RNA, U6 small nuclear 238, pseudogene
2.4077
0.0000
9
ENSG00000199875
Y RNA
2.4037
0.0000
10
ENSG00000254911
SCARNA9
small Cajal body-specific RNA 9
2.4037
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000100226
GTPBP1
GTP binding protein 1
-1.6396
1.0000
63127
ENSG00000267649
novel transcript
-1.6394
0.6237
63126
ENSG00000226608
FTLP3
ferritin light chain pseudogene 3
-1.6391
0.0000
63125
ENSG00000143776
CDC42BPA
CDC42 binding protein kinase alpha
-1.6380
0.6375
63124
ENSG00000273254
novel transcript, antisense to USP16
-1.6364
1.0000
63123
ENSG00000232773
DEFB130D
defensin beta 130D (pseudogene)
-1.6364
1.0000
63122
ENSG00000273329
novel transcript
-1.6362
0.6627
63121
ENSG00000259572
LINC01491
long intergenic non-protein coding RNA 1491
-1.6356
1.0000
63120
ENSG00000182888
RPS27AP20
RPS27A pseudogene 20
-1.6345
0.0202
63119
ENSG00000237101
novel transcript
-1.6340
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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