Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481570

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481570


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M43Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000163793 DNAJC5G DnaJ heat shock protein family (Hsp40) member C5 gamma 2.8074 0.0000
2 ENSG00000265623 MIR3139 microRNA 3139 2.8074 0.0000
3 ENSG00000145949 MYLK4 myosin light chain kinase family member 4 2.5850 0.0000
4 ENSG00000206982 Y RNA 2.5850 0.0000
5 ENSG00000213130 EEF1DP5 eukaryotic translation elongation factor 1 delta pseudogene 5 2.5850 0.0000
6 ENSG00000233971 RPS20P10 ribosomal protein S20 pseudogene 10 2.5850 0.0000
7 ENSG00000248139 CUL4AP1 cullin 4A pseudogene 1 2.5850 0.0000
8 ENSG00000200183 RNU6-238P RNA, U6 small nuclear 238, pseudogene 2.4077 0.0000
9 ENSG00000199875 Y RNA 2.4037 0.0000
10 ENSG00000254911 SCARNA9 small Cajal body-specific RNA 9 2.4037 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000100226 GTPBP1 GTP binding protein 1 -1.6396 1.0000
63127 ENSG00000267649 novel transcript -1.6394 0.6237
63126 ENSG00000226608 FTLP3 ferritin light chain pseudogene 3 -1.6391 0.0000
63125 ENSG00000143776 CDC42BPA CDC42 binding protein kinase alpha -1.6380 0.6375
63124 ENSG00000273254 novel transcript, antisense to USP16 -1.6364 1.0000
63123 ENSG00000232773 DEFB130D defensin beta 130D (pseudogene) -1.6364 1.0000
63122 ENSG00000273329 novel transcript -1.6362 0.6627
63121 ENSG00000259572 LINC01491 long intergenic non-protein coding RNA 1491 -1.6356 1.0000
63120 ENSG00000182888 RPS27AP20 RPS27A pseudogene 20 -1.6345 0.0202
63119 ENSG00000237101 novel transcript -1.6340 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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