Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481570

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481570 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP074598	SRP074598_M43	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Metaphase II oocyte	Human	Genitalia	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000163793	DNAJC5G	DnaJ heat shock protein family (Hsp40) member C5 gamma	2.8074	0.0000
2	ENSG00000265623	MIR3139	microRNA 3139	2.8074	0.0000
3	ENSG00000145949	MYLK4	myosin light chain kinase family member 4	2.5850	0.0000
4	ENSG00000206982		Y RNA	2.5850	0.0000
5	ENSG00000213130	EEF1DP5	eukaryotic translation elongation factor 1 delta pseudogene 5	2.5850	0.0000
6	ENSG00000233971	RPS20P10	ribosomal protein S20 pseudogene 10	2.5850	0.0000
7	ENSG00000248139	CUL4AP1	cullin 4A pseudogene 1	2.5850	0.0000
8	ENSG00000200183	RNU6-238P	RNA, U6 small nuclear 238, pseudogene	2.4077	0.0000
9	ENSG00000199875		Y RNA	2.4037	0.0000
10	ENSG00000254911	SCARNA9	small Cajal body-specific RNA 9	2.4037	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000100226	GTPBP1	GTP binding protein 1	-1.6396	1.0000
63127	ENSG00000267649		novel transcript	-1.6394	0.6237
63126	ENSG00000226608	FTLP3	ferritin light chain pseudogene 3	-1.6391	0.0000
63125	ENSG00000143776	CDC42BPA	CDC42 binding protein kinase alpha	-1.6380	0.6375
63124	ENSG00000273254		novel transcript, antisense to USP16	-1.6364	1.0000
63123	ENSG00000232773	DEFB130D	defensin beta 130D (pseudogene)	-1.6364	1.0000
63122	ENSG00000273329		novel transcript	-1.6362	0.6627
63121	ENSG00000259572	LINC01491	long intergenic non-protein coding RNA 1491	-1.6356	1.0000
63120	ENSG00000182888	RPS27AP20	RPS27A pseudogene 20	-1.6345	0.0202
63119	ENSG00000237101		novel transcript	-1.6340	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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