SHOGoiN Cell Methylome: GSM2481570
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481570 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP074598 | SRP074598_M43 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Metaphase II oocyte | Human | Genitalia | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000163793 | DNAJC5G | DnaJ heat shock protein family (Hsp40) member C5 gamma | 2.8074 | 0.0000 |
| 2 | ENSG00000265623 | MIR3139 | microRNA 3139 | 2.8074 | 0.0000 |
| 3 | ENSG00000145949 | MYLK4 | myosin light chain kinase family member 4 | 2.5850 | 0.0000 |
| 4 | ENSG00000206982 | NA | 2.5850 | 0.0000 | |
| 5 | ENSG00000213130 | EEF1DP5 | eukaryotic translation elongation factor 1 delta pseudogene 5 | 2.5850 | 0.0000 |
| 6 | ENSG00000233971 | RPS20P10 | ribosomal protein S20 pseudogene 10 | 2.5850 | 0.0000 |
| 7 | ENSG00000248139 | CUL4AP1 | cullin 4A pseudogene 1 | 2.5850 | 0.0000 |
| 8 | ENSG00000200183 | RNU6-238P | RNA, U6 small nuclear 238, pseudogene | 2.4077 | 0.0000 |
| 9 | ENSG00000199875 | NA | 2.4037 | 0.0000 | |
| 10 | ENSG00000254911 | SCARNA9 | small Cajal body-specific RNA 9 | 2.4037 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000255192 | NANOGP8 | Nanog homeobox retrogene P8 | -1.7500 | 0.6237 |
| 63340 | ENSG00000242061 | ribosomal protein L26 (RPL26) pseudogene | -1.7500 | 0.6237 | |
| 63339 | ENSG00000203908 | KHDC3L | KH domain containing 3 like, subcortical maternal complex member | -1.7500 | 1.0000 |
| 63338 | ENSG00000164647 | STEAP1 | STEAP family member 1 | -1.7500 | 1.0000 |
| 63337 | ENSG00000139168 | ZCRB1 | zinc finger CCHC-type and RNA binding motif containing 1 | -1.7500 | 1.0000 |
| 63336 | ENSG00000283492 | MIR7153 | microRNA 7153 | -1.7483 | 0.1196 |
| 63335 | ENSG00000145740 | SLC30A5 | solute carrier family 30 member 5 | -1.7463 | 0.0008 |
| 63334 | ENSG00000164756 | SLC30A8 | solute carrier family 30 member 8 | -1.7460 | 0.2246 |
| 63333 | ENSG00000254995 | STX16-NPEPL1 | STX16-NPEPL1 readthrough (NMD candidate) | -1.7429 | 0.0264 |
| 63332 | ENSG00000161243 | F-box protein 27 | -1.7418 | 0.0928 |
