SHOGoiN Cell Methylome: GSM2481570

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481570


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M43Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000163793 DNAJC5G DnaJ heat shock protein family (Hsp40) member C5 gamma 2.8074 0.0000
2 ENSG00000265623 MIR3139 microRNA 3139 2.8074 0.0000
3 ENSG00000145949 MYLK4 myosin light chain kinase family member 4 2.5850 0.0000
4 ENSG00000206982 NA 2.5850 0.0000
5 ENSG00000213130 EEF1DP5 eukaryotic translation elongation factor 1 delta pseudogene 5 2.5850 0.0000
6 ENSG00000233971 RPS20P10 ribosomal protein S20 pseudogene 10 2.5850 0.0000
7 ENSG00000248139 CUL4AP1 cullin 4A pseudogene 1 2.5850 0.0000
8 ENSG00000200183 RNU6-238P RNA, U6 small nuclear 238, pseudogene 2.4077 0.0000
9 ENSG00000199875 NA 2.4037 0.0000
10 ENSG00000254911 SCARNA9 small Cajal body-specific RNA 9 2.4037 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000255192 NANOGP8 Nanog homeobox retrogene P8 -1.7500 0.6237
63340 ENSG00000242061 ribosomal protein L26 (RPL26) pseudogene -1.7500 0.6237
63339 ENSG00000203908 KHDC3L KH domain containing 3 like, subcortical maternal complex member -1.7500 1.0000
63338 ENSG00000164647 STEAP1 STEAP family member 1 -1.7500 1.0000
63337 ENSG00000139168 ZCRB1 zinc finger CCHC-type and RNA binding motif containing 1 -1.7500 1.0000
63336 ENSG00000283492 MIR7153 microRNA 7153 -1.7483 0.1196
63335 ENSG00000145740 SLC30A5 solute carrier family 30 member 5 -1.7463 0.0008
63334 ENSG00000164756 SLC30A8 solute carrier family 30 member 8 -1.7460 0.2246
63333 ENSG00000254995 STX16-NPEPL1 STX16-NPEPL1 readthrough (NMD candidate) -1.7429 0.0264
63332 ENSG00000161243 F-box protein 27 -1.7418 0.0928

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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