SHOGoiN Cell Methylome: GSM2481571

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481571


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M44Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257807 starch binding domain 1 (STBD1) pseudogene 3.9069 0.0000
2 ENSG00000207763 MIR617 microRNA 617 3.7004 0.0000
3 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 3.7004 0.0000
4 ENSG00000228751 HERV-FRD provirus ancestral Env polyprotein(ERVFRDE1) pseudogene 3.5850 0.0000
5 ENSG00000237160 HERV-FRD provirus ancestral Env polyprotein(ERVFRDE1) pseudogene 3.5850 0.0000
6 ENSG00000152404 CWF19L2 CWF19 like cell cycle control factor 2 3.4594 0.0000
7 ENSG00000214695 NPAP1P2 nuclear pore associated protein 1 pseudogene 2 3.3219 0.0000
8 ENSG00000215800 RSL24D1P4 ribosomal L24 domain containing 1 pseudogene 4 3.1699 0.0000
9 ENSG00000234435 LINC01432 long intergenic non-protein coding RNA 1432 3.1699 0.0000
10 ENSG00000212550 RNU1-78P RNA, U1 small nuclear 78, pseudogene 3.0850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000124198 ARFGEF2 ADP ribosylation factor guanine nucleotide exchange factor 2 -2.3705 0.0000
63340 ENSG00000276293 PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta -2.3699 0.0000
63339 ENSG00000252367 NA -2.3676 0.0000
63338 ENSG00000253304 TMEM200B transmembrane protein 200B -2.3669 0.0000
63337 ENSG00000273264 novel transcript -2.3665 0.0000
63336 ENSG00000255468 novel transcript, antisense to SLC29A2 -2.3657 0.0000
63335 ENSG00000207296 RNU6-140P RNA, U6 small nuclear 140, pseudogene -2.3656 0.0000
63334 ENSG00000164296 TIGD6 tigger transposable element derived 6 -2.3654 0.0000
63333 ENSG00000167779 IGFBP6 insulin like growth factor binding protein 6 -2.3653 0.0000
63332 ENSG00000134533 RERG RAS like estrogen regulated growth inhibitor -2.3652 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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