SHOGoiN Cell Methylome: GSM2481571
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481571 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP074598 | SRP074598_M44 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Zygote | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000257807 | starch binding domain 1 (STBD1) pseudogene | 3.9069 | 0.0000 | |
| 2 | ENSG00000207763 | MIR617 | microRNA 617 | 3.7004 | 0.0000 |
| 3 | ENSG00000242922 | RPL21P104 | ribosomal protein L21 pseudogene 104 | 3.7004 | 0.0000 |
| 4 | ENSG00000228751 | HERV-FRD provirus ancestral Env polyprotein(ERVFRDE1) pseudogene | 3.5850 | 0.0000 | |
| 5 | ENSG00000237160 | HERV-FRD provirus ancestral Env polyprotein(ERVFRDE1) pseudogene | 3.5850 | 0.0000 | |
| 6 | ENSG00000152404 | CWF19L2 | CWF19 like cell cycle control factor 2 | 3.4594 | 0.0000 |
| 7 | ENSG00000214695 | NPAP1P2 | nuclear pore associated protein 1 pseudogene 2 | 3.3219 | 0.0000 |
| 8 | ENSG00000215800 | RSL24D1P4 | ribosomal L24 domain containing 1 pseudogene 4 | 3.1699 | 0.0000 |
| 9 | ENSG00000234435 | LINC01432 | long intergenic non-protein coding RNA 1432 | 3.1699 | 0.0000 |
| 10 | ENSG00000212550 | RNU1-78P | RNA, U1 small nuclear 78, pseudogene | 3.0850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000124198 | ARFGEF2 | ADP ribosylation factor guanine nucleotide exchange factor 2 | -2.3705 | 0.0000 |
| 63340 | ENSG00000276293 | PIP4K2B | phosphatidylinositol-5-phosphate 4-kinase type 2 beta | -2.3699 | 0.0000 |
| 63339 | ENSG00000252367 | NA | -2.3676 | 0.0000 | |
| 63338 | ENSG00000253304 | TMEM200B | transmembrane protein 200B | -2.3669 | 0.0000 |
| 63337 | ENSG00000273264 | novel transcript | -2.3665 | 0.0000 | |
| 63336 | ENSG00000255468 | novel transcript, antisense to SLC29A2 | -2.3657 | 0.0000 | |
| 63335 | ENSG00000207296 | RNU6-140P | RNA, U6 small nuclear 140, pseudogene | -2.3656 | 0.0000 |
| 63334 | ENSG00000164296 | TIGD6 | tigger transposable element derived 6 | -2.3654 | 0.0000 |
| 63333 | ENSG00000167779 | IGFBP6 | insulin like growth factor binding protein 6 | -2.3653 | 0.0000 |
| 63332 | ENSG00000134533 | RERG | RAS like estrogen regulated growth inhibitor | -2.3652 | 0.0000 |
