Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481571

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481571 Profile download	7010000000000000000000-769	Sequence Read Archive	SRP074598	SRP074598_M44	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Zygote	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000257807		starch binding domain 1 (STBD1) pseudogene	3.9069	0.0000
2	ENSG00000207763	MIR617	microRNA 617	3.7004	0.0000
3	ENSG00000242922	RPL21P104	ribosomal protein L21 pseudogene 104	3.7004	0.0000
4	ENSG00000228751		HERV-FRD provirus ancestral Env polyprotein(ERVFRDE1) pseudogene	3.5850	0.0000
5	ENSG00000237160		HERV-FRD provirus ancestral Env polyprotein(ERVFRDE1) pseudogene	3.5850	0.0000
6	ENSG00000152404	CWF19L2	CWF19 like cell cycle control factor 2	3.4594	0.0000
7	ENSG00000214695	NPAP1P2	nuclear pore associated protein 1 pseudogene 2	3.3219	0.0000
8	ENSG00000215800	RSL24D1P4	ribosomal L24 domain containing 1 pseudogene 4	3.1699	0.0000
9	ENSG00000234435	LINC01432	long intergenic non-protein coding RNA 1432	3.1699	0.0000
10	ENSG00000212550	RNU1-78P	RNA, U1 small nuclear 78, pseudogene	3.0850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000224185	SNX18P9	sorting nexin 18 pseudogene 9	-2.2925	0.3653
63127	ENSG00000172469	MANEA	mannosidase endo-alpha	-2.2925	0.3790
63126	ENSG00000255337		novel transcript	-2.2925	0.0000
63125	ENSG00000090971	NAT14	N-acetyltransferase 14 (putative)	-2.2920	0.0000
63124	ENSG00000250786	SNHG18	small nucleolar RNA host gene 18	-2.2918	0.0000
63123	ENSG00000239112	SNORD123	small nucleolar RNA, C/D box 123	-2.2918	0.0000
63122	ENSG00000254558		ankyrin repeat domain-containing protein 33B (ANKRD33B) pseudogene	-2.2912	0.0000
63121	ENSG00000284512		novel protein	-2.2909	0.0000
63120	ENSG00000131871	SELENOS	selenoprotein S	-2.2903	0.0000
63119	ENSG00000250833	DNM1P17	dynamin 1 pseudogene 17	-2.2899	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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