Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481571

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481571


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M44Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257807 starch binding domain 1 (STBD1) pseudogene 3.9069 0.0000
2 ENSG00000207763 MIR617 microRNA 617 3.7004 0.0000
3 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 3.7004 0.0000
4 ENSG00000228751 HERV-FRD provirus ancestral Env polyprotein(ERVFRDE1) pseudogene 3.5850 0.0000
5 ENSG00000237160 HERV-FRD provirus ancestral Env polyprotein(ERVFRDE1) pseudogene 3.5850 0.0000
6 ENSG00000152404 CWF19L2 CWF19 like cell cycle control factor 2 3.4594 0.0000
7 ENSG00000214695 NPAP1P2 nuclear pore associated protein 1 pseudogene 2 3.3219 0.0000
8 ENSG00000215800 RSL24D1P4 ribosomal L24 domain containing 1 pseudogene 4 3.1699 0.0000
9 ENSG00000234435 LINC01432 long intergenic non-protein coding RNA 1432 3.1699 0.0000
10 ENSG00000212550 RNU1-78P RNA, U1 small nuclear 78, pseudogene 3.0850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000224185 SNX18P9 sorting nexin 18 pseudogene 9 -2.2925 0.3653
63127 ENSG00000172469 MANEA mannosidase endo-alpha -2.2925 0.3790
63126 ENSG00000255337 novel transcript -2.2925 0.0000
63125 ENSG00000090971 NAT14 N-acetyltransferase 14 (putative) -2.2920 0.0000
63124 ENSG00000250786 SNHG18 small nucleolar RNA host gene 18 -2.2918 0.0000
63123 ENSG00000239112 SNORD123 small nucleolar RNA, C/D box 123 -2.2918 0.0000
63122 ENSG00000254558 ankyrin repeat domain-containing protein 33B (ANKRD33B) pseudogene -2.2912 0.0000
63121 ENSG00000284512 novel protein -2.2909 0.0000
63120 ENSG00000131871 SELENOS selenoprotein S -2.2903 0.0000
63119 ENSG00000250833 DNM1P17 dynamin 1 pseudogene 17 -2.2899 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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