Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481571
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481571
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP074598
SRP074598_M44
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Zygote
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000257807
starch binding domain 1 (STBD1) pseudogene
3.9069
0.0000
2
ENSG00000207763
MIR617
microRNA 617
3.7004
0.0000
3
ENSG00000242922
RPL21P104
ribosomal protein L21 pseudogene 104
3.7004
0.0000
4
ENSG00000228751
HERV-FRD provirus ancestral Env polyprotein(ERVFRDE1) pseudogene
3.5850
0.0000
5
ENSG00000237160
HERV-FRD provirus ancestral Env polyprotein(ERVFRDE1) pseudogene
3.5850
0.0000
6
ENSG00000152404
CWF19L2
CWF19 like cell cycle control factor 2
3.4594
0.0000
7
ENSG00000214695
NPAP1P2
nuclear pore associated protein 1 pseudogene 2
3.3219
0.0000
8
ENSG00000215800
RSL24D1P4
ribosomal L24 domain containing 1 pseudogene 4
3.1699
0.0000
9
ENSG00000234435
LINC01432
long intergenic non-protein coding RNA 1432
3.1699
0.0000
10
ENSG00000212550
RNU1-78P
RNA, U1 small nuclear 78, pseudogene
3.0850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000224185
SNX18P9
sorting nexin 18 pseudogene 9
-2.2925
0.3653
63127
ENSG00000172469
MANEA
mannosidase endo-alpha
-2.2925
0.3790
63126
ENSG00000255337
novel transcript
-2.2925
0.0000
63125
ENSG00000090971
NAT14
N-acetyltransferase 14 (putative)
-2.2920
0.0000
63124
ENSG00000250786
SNHG18
small nucleolar RNA host gene 18
-2.2918
0.0000
63123
ENSG00000239112
SNORD123
small nucleolar RNA, C/D box 123
-2.2918
0.0000
63122
ENSG00000254558
ankyrin repeat domain-containing protein 33B (ANKRD33B) pseudogene
-2.2912
0.0000
63121
ENSG00000284512
novel protein
-2.2909
0.0000
63120
ENSG00000131871
SELENOS
selenoprotein S
-2.2903
0.0000
63119
ENSG00000250833
DNM1P17
dynamin 1 pseudogene 17
-2.2899
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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